1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTACCATAAGTGCCGTCAAGAATTTTCTGATTTCTACAAAAGTGCTCTGCTTTATCTTGCATACACGTCTGTGGAGGACCTTTCAGAATCGTTTAAGCTGgtatgcccctgtaatattatgtaccttgttcttatattttgttcttatgttaagtttcctgttagcgatagtggataagagtattcagaaatttgatgaaatttagaggaaactgaagaaaaaagttgcgtactagttagcttccctagagtcaccgatcaaattttgctaatgtcagatcatatctgtgtctttcag
species | Arabidopsis thaliana |
transcript | AT5G45620.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TACACGTCTGTGGAGGACCTTTCAGAATCGTTTAAGCTG GATTTGGCTTTCGATTTGTCACTATCAGCTCTACTTGGGGAGAACATCTATEST: gi|116482621|gb|EG525213.1|EG525213
genomic: TACACGTCTGTGGAGGACCTTTCAGAATCGTTTAAGCTGgtatgcccct ... tgtctttcagGATTTGGCTTTCGATTTGTCACTATCAGCTCTACTTGGGGAGAACATCTAT
EST: TTTATCTTGCATACACGTCTGTGGAGGACCTTTCAGAATCGTTTAAGCTG GATTTGGCTTTCGATTTGTCACTATCAGCTCTACTTGGGGAGAACATCTATEST: gi|125316428|gb|EL330513.1|EL330513
genomic: TTTATCTTGCATACACGTCTGTGGAGGACCTTTCAGAATCGTTTAAGCTGgtatgcccct ... tgtctttcagGATTTGGCTTTCGATTTGTCACTATCAGCTCTACTTGGGGAGAACATCTAT
EST: CTTGCATACACGTCTGTGGAGGACCTTTCAGAATCGTTTAAGCTG GATTTGGCTTTCGATTTGTCACTATCAGCTCTACTTGGGGAGAACATCTATEST: gi|125139011|gb|EL177999.1|EL177999
genomic: CTTGCATACACGTCTGTGGAGGACCTTTCAGAATCGTTTAAGCTGgtatgcccct ... tgtctttcagGATTTGGCTTTCGATTTGTCACTATCAGCTCTACTTGGGGAGAACATCTAT
EST: TCTGTGGAGGACCTTTCAGAATCGTTTAAGCTG GATTTGGCTTTCGATTTGTCACTATCAGCTCTACTTGGGGAGAGCATCTATEST: gi|125128151|gb|EL172633.1|EL172633
genomic: TCTGTGGAGGACCTTTCAGAATCGTTTAAGCTGgtatgcccct ... tgtctttcagGATTTGGCTTTCGATTTGTCACTATCAGCTCTACTTGGGGAGAACATCTAT
EST: TTTATCTTGCATACACGTCTGTGGAGGACCTTTCAGAATCGTTTAAGCTG GATTTGGCTTTCGATTTGTCACTATCAGCTCTACTTGGGGAGAACATCTAT
genomic: TTTATCTTGCATACACGTCTGTGGAGGACCTTTCAGAATCGTTTAAGCTGgtatgcccct ... tgtctttcagGATTTGGCTTTCGATTTGTCACTATCAGCTCTACTTGGGGAGAACATCTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACCATAAGTGCCGTCAAGAATTTTCTGATTTCTACAAAAGTGCTCTGCTTTATCTTGCATACACGTCTGTGGAGGACCTTTCAGAATCGTTTAAGCTGgtatgcccctgtaatattatgtaccttgttcttatattttgttcttatgttaagtttcctgttagcgatagtggataagagtattcagaaatttgatgaaatttagaggaaactgaagaaaaaagttgcgtactagttagcttccctagagtcaccgatcaaattttgctaatgtcagatcatatctgtgtctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG