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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCAACTCCTAAATCGGTTCTGAAGCTGATGGGATTAAAAGGTTTAACACTGTACCATCTCAAGAGCCATTTACAGgtccaaatttatacaaatttgagtatataataatgtataatgtctacaaattgttggtttatattctctcttatgatgtgtttctatatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G45580.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G45580.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv02s0033g00300.t01 (Vitis vinifera), 5'ss of exon 2
AAGCAACTCCTAAATCGGTTCTGAAGCTGATGGGATTAAAAGGTTTAACACTGTACCATCTCAAGAGCCATTTACAGgtccaaatttatacaaatttgagtatataataatgtataatgtctacaaattgttggtttatattctctcttatgatgtgtttctatatgcag----------------
||||||| || || |||||  ||| ||||||||| || || || || |||||||||||| | |||||||||||||||||| || | | | |  ||||||||     |||   ||| ||   |     || || ||||    | |||| | |  |     || | |   |                 
AAGCAACACCCAAGTCGGTGTTGAGGCTGATGGGCTTGAAGGGCTTGACACTGTACCATTTGAAGAGCCATTTACAGgtctaactct-ttctgatttgagtgct--ataccctatcattcttgttctttttttgttttctgtttctccttt--tactcctcaacagctaatcttactgatctgcag