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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGGAACACCACCACAAGAGTTTGCTTTGATTGTTGATACTGGAAGTACTGTTACTTACGTTCCTTGCTCTACTTGTAAACAGTGTGGGAAGCATCAGgtgaattatctttttcctaaatgtgattaagcttttggtttgtagtatatcattgcttaagggatttgtgattactactgtttcag

Basic information

species Arabidopsis thaliana
transcript AT5G43100.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G43100.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ30662 (Selaginella moellendorffii), 5'ss of exon 2
GATTGGAACACCACCACAAGAGTTTGCTTTGATTGTTGATACTGGAAGTACTGTTACTTACGTTCCTTGCTCTACTTGTAAACAGTGTGGGAAGCATCAGgtgaattatctttttcctaaatgtgattaagcttttggtttgtagtatatcattgcttaagggatttgtgattactactgtttcag
||||||||||||||| || || ||| || | ||||| || |||||||| ||||| |||||||||||||| ||| | ||||  || ||||| || || |||||  || |  | || | |   |      ||     || ||||   | | |  ||  |  ||                         
GATTGGAACACCACCTCACGAATTTTCTCTCATTGTCGACACTGGAAGCACTGTCACTTACGTTCCTTGTTCTTCGTGTACTCACTGTGGCAATCACCAGgtagat-agatcttcctttctttctcccaaaaaaatgttttgctctttttttttcttgcag-------------------------