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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGCAAGATCGCGTGTAATAGGTTACAAAAGGAGTTATCAGAGTGGCAAGTAAATCCACCGACTGGGTTTAAGCACAGAGTTACTGATAATCTTCAAAAgtaattttcatttcaaaatctttcctttttttgattatttatcatttcgatttttgattgttttttttgtttttgtgtgatttaaag

Basic information

species Arabidopsis thaliana
transcript AT5G42990.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G42990.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S193_49V6.1 (Physcomitrella patens), 5'ss of exon 2
TAAGCAAGATCGCGTGTAATAGGTTACAAAAGGAGTTATCAGAGTGGCAAGTAAATCCACCGACTGGGTTTAAGCACAGAGTTACTGATAATCTTCAAAAgtaa---------ttttcatttcaaaatctttcctttttttgattatttatcatttcgatttttg--attgttttttttgttt-ttgtgtgatttaaag--------------
| ||    || ||    ||| || | || || ||  |  | ||||||||||| ||||||||   ||| |||| ||||||||||||||| | |||||||| |||          || || |   || ||  || |   | |   ||  | |||  | |  | | ||  || |  |  |||| || ||   | |   || |              
TGAGTCGAATTGCTGCAAATCGGCTGCAGAAAGAACTTACTGAGTGGCAAGTGAATCCACCATGTGGATTTAGGCACAGAGTTACTGACAGTCTTCAAAGgtagatgaaattgttgtcgtgggaacatgattgcgaatctgtttttataatccctcctgtgtctgcgatcggatggtttggttattacatcaggcaaggttgtttatccgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163993799|gb|ES095797.1|ES095797
EST:     TTACTGATAATCTTC-AAA                         ATGGGTAATTGAGGTAACAGGAGCACCTGGTACGCTTTACGCTAATGAAAC
genomic: TTACTGATAATCTTCAAAAgtaattttca ... tgatttaaagATGGGTAATTGAGGTAACAGGAGCACCTGGTACGCTTTACGCTAATGAAAC
EST: gi|164102342|gb|ES203245.1|ES203245
EST:     TCCACCGACTGGGTTTAAGCACAGAGTTACTGATAATCTTCTAAAA                         ATGGGTAATTGAGGTAACAGGAGCACCTGGTACGCTTTACGCTAATGAAA
genomic: TCCACCGACTGGGTTTAAGCACAGAGTTACTGATAATCTTC-AAAAgtaattttca ... tgatttaaagATGGGTAATTGAGGTAACAGGAGCACCTGGTACGCTTTACGCTAATGAAA