1 5' 3' | 2 5' 3' | 3 5' 3' |
TCATGGAATCTACGAGGCAGCTAGCTTCGGAGGAACAAACATTGAGTTGAATGCTTTTGAAGACAAGAAATGTCCTGGCGAATCTCGTTTCCCTGCTCAGgtactactatgtacttactttcttgcgtttctttgagctcttgcttttgtctaaatgctaacaaattttttggggtaataaaaataaag
species | Arabidopsis thaliana |
transcript | AT5G42050.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGCTTTTGAAGACAAGAAATGTCCTGGCGAATCTCGTTTCCCTGCTCAG GTGAGGGCCATAACGAGGAAAGTATGTTTGCCACTGGAAGAAGEST: gi|125176197|gb|EL195678.1|EL195678
genomic: ATGCTTTTGAAGACAAGAAATGTCCTGGCGAATCTCGTTTCCCTGCTCAGgtactactat ... aaaaataaagGTGAGGGCCATAACGAGGAAAGTATGTTTGCCACTGGAAGAAG
EST: TGCTTTTGAAGTACAAGAAATGTCCTGGCGAATCTCGTTTCCCTGCTCAG GTGAGGGCCATAACGAGGAAAGTATGTTTGCCAEST: gi|124932519|gb|EL009771.1|EL009771
genomic: TGCTTTTGAAG-ACAAGAAATGTCCTGGCGAATCTCGTTTCCCTGCTCAGgtactactat ... aaaaataaagGTGAGGGCCATAACGAGGAAAGTATGTTTGCCA
EST: TCCTGGCGAATCTCGTTTCCCTGCTCAG GTGAGGGCCATAACGAGGAAAGTATGTTTGCCACTGGAAGAAGATTCTTTCEST: gi|116481291|gb|EG523883.1|EG523883
genomic: TCCTGGCGAATCTCGTTTCCCTGCTCAGgtactactat ... aaaaataaagGTGAGGGCCATAACGAGGAAAGTATGTTTGCCACTGGAAGAAGATTCTTTC
EST: ATGCTTTTGAAGACAAGAAATGTCCTGGCGAATCTCGTTTCCCTGCTCAG GTGAGGGCCATAACGAGGAAAGTATGTTTGCCACTGGAAGAAGATTCTTTC
genomic: ATGCTTTTGAAGACAAGAAATGTCCTGGCGAATCTCGTTTCCCTGCTCAGgtactactat ... aaaaataaagGTGAGGGCCATAACGAGGAAAGTATGTTTGCCACTGGAAGAAGATTCTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATGGAATCTACGAGGCAGCTAGCTTCGGAGGAACAAACATTGAGTTGAATGCTTTTGAAGACAAGAAATGTCCTGGCGAATCTCGTTTCCCTGCTCAGgtactactatgtacttactttcttgcgtttctttgagctcttgcttttgtctaaatgctaacaaattttttggggtaataaaaataaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA