1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttcaaaaatctcaaatctttctccttcttgttggatccattactttatctatgattatctggtaatatgccagagatttagcattctagagatc...
species | Arabidopsis thaliana |
transcript | AT5G41700.5 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTAEST: gi|125039096|gb|EL111365.1|EL111365
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTA
EST: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTAEST: gi|125321542|gb|EL335627.1|EL335627
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTA
EST: TCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTGEST: gi|125280106|gb|EL294191.1|EL294191
genomic: TCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: AAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTAGCAGTGCAG GTCCTGTTGCTGEST: gi|125041918|gb|EL114187.1|EL114187
genomic: AAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCT-GCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTG
EST: CTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTGEST: gi|124954543|gb|EL029628.1|EL029628
genomic: CTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: TCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGEST: gi|124925884|gb|EL003809.1|EL003809
genomic: TCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAG
EST: AAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATG
genomic: AAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTTTCTCAGTGAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttcaaaaatctcaaatctttctccttcttgttggatccattactttatctatgattatctggtaatatgccagagatttagcattctagagatc
- - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG