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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCTTGTATAACTGGTGACTATGCAATGCAGAATGTTATTCTTCAAATGGGTTTGCGATTGCTTGCACCCGGCGGAATGCAAATTCGCCAACTGCATAGgtactctaaattgatcagatcttccttttttttgttcaaatgtcagacacttttctttagcaagggtcattaactgaaaaagatacaattcttacactttattgcattgacatcttcag

Basic information

species Arabidopsis thaliana
transcript AT5G41190.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G41190.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G37950.1 (Glycine max), 5'ss of exon 2
TAGCTTGTATAACTGGTGACTATGCAATGCAGAATGTTATTCTTCAAATGGGTTTGCGATTGCTTGCACCCGGCGGAATGCAAATTCGCCAACTGCATAGgt-actctaaattgatcagatcttccttttttttgtt-caaat-------gtcagacactttt----ctttagcaagggtcattaactgaaaaagatacaattcttacactt-tattgcattgacat---cttcag
|||| |||||||||||||||| ||| ||||| |||||| |||| |||||||||||||| ||||| ||||| || ||||  || || | ||| ||||| |||| | | | | | | |       | |||  | || || |||||       |||||  |  | |     |  |    | |        |  |||| || || |  ||   ||| |  |  | | |  |    | |||
TAGCCTGTATAACTGGTGACTTTGCGATGCAAAATGTTCTTCTACAAATGGGTTTGCGCTTGCTGGCACCTGGAGGAACACAGATACACCAGCTGCACAGgtgattttcagtagcttcttcaatacttgctgttattacaaattacctgtgtcagtaatctctacaattccattctgtgcagcatgatataaaaaatgcattctttgtgcttatcctttaataatttgcattccag

upper sequence: AT5G41190.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G01650.1 (Glycine max), 5'ss of exon 4
TAGCTTGTATAACTGGTGACTATGCAATGCAGAATGTTATTCTTCAAATGGGTTTGCGATTGCTTGCACCCGGCGGAATGCAAATTCGCCAACTGCATAGgtactctaaattgatcagatcttccttttttttgttcaaatgtcagacacttttctttagcaagggtcattaactgaaaaagatacaattcttacactttattgcattgacatcttcag
|||| |||||||||||||||| ||||||||| |||||| |||| ||||||||||| || ||||| ||||| || ||||  || || | ||| ||||| ||||  | |  | |       ||    ||   | |  | | |  | |   |  |||  || |  | |   |||   | |||   ||       ||| |   ||                  
TAGCCTGTATAACTGGTGACTTTGCAATGCAAAATGTTCTTCTACAAATGGGTTTACGCTTGCTGGCACCTGGAGGAACACAGATACACCAGCTGCACAGgtgattttcaatagctttttcaatattcgctgttattacaaattacctatctttgctttgtgaagaa-attcttttaaatgcatgtggaaattaaagccta------------------

upper sequence: AT5G41190.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv02s0025g03690.t01 (Vitis vinifera), 5'ss of exon 2
TAGCTTGTATAACTGGTGACTATGCAATGCAGAATGTTATTCTTCAAATGGGTTTGCGATTGCTTGCACCCGGCGGAATGCAAATTCGCCAACTGCATAGgtact--ctaaattgatcagatcttccttttttttgttcaaatgtcag---acacttttctttagcaagggtcattaactgaaaaagatacaattcttacactttattgcattgacatcttcag
|||||||| ||||  |||| |  |||||||| |||||| |||| || |||||||||||  |||| ||||| || || ||||| || ||||| ||||| ||||||   ||  ||  |    || ||       ||  | |  |||||     |   |||||||  ||  |  | ||| |       ||| |||| |   |||                       
TAGCTTGTGTAACCAGTGATTTCGCAATGCAAAATGTTCTTCTGCAGATGGGTTTGCGCCTGCTGGCACCAGGAGGGATGCAGATACGCCAGCTGCACAGgtacaaactgcatgcaatttatgttgaccgggttattactgatgtctacttatgattttcttctgcttg--ttattcaacctttgagacacaaatgccacag----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86060232|gb|DR355989.1|DR355989
EST:     GGTTTGCGATTGCTTGCACCCGGCGGAATGCAAATTCGCCAACTGCATAG                         GTGGATCTTAAAATGCCATGCTTGCTACACAGTAACTCCGGAAATTGGAAG
genomic: GGTTTGCGATTGCTTGCACCCGGCGGAATGCAAATTCGCCAACTGCATAGgtactctaaa ... acatcttcagGTGGATCTTAAAATGCCATGCTTGCTACACAGTAACTCCTGAAATTGGAAG