1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTTAGAGAGAGATTATCTGGTGGGCAATTTAGGATGCTCAATGAGAAACTCTACACTTGCTCgtaagttctaatttcattctttccgatgatcttccttcagttttcacagtgcttaattcaaaaatctctgctttctcag
species | Arabidopsis thaliana |
transcript | AT5G40530.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTATCTGGTGGGCAATTTAGGATGCTCAATGAGAAACTCTACACTTGCTC TGGAAAAGAAGCTTTAGACTACTTTAAAGAAGATCCACAAATGTTTGATATEST: gi|86085419|gb|DR381178.1|DR381178
genomic: TTATCTGGTGGGCAATTTAGGATGCTCAATGAGAAACTCTACACTTGCTCgtaagttcta ... gctttctcagTGGAAAAGAAGCTTTAGACTACTTTAAAGAAGATCCACAAATGTTTGATAT
EST: TTATCTGGTGGGCAATTTAGGATGCTCAATGAGAAACTCTACACTTGCTC TGGAAAAGAAGCTTTAGACTACTTTAAAGAAGATCCACAAATGTTTGATAT
genomic: TTATCTGGTGGGCAATTTAGGATGCTCAATGAGAAACTCTACACTTGCTCgtaagttcta ... gctttctcagTGGAAAAGAAGCTTTAGACTACTTTAAAGAAGATCCACAAATGTTTGATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTAGAGAGAGATTATCTGGTGGGCAATTTAGGATGCTCAATGAGAAACTCTACACTTGCTCgtaagttctaatttcattctttccgatgatcttccttcagttttcacagtgcttaattcaaaaatctctgctttctcag
- - - - - - - - TGGTGG
- - - - - - - - - - - - - - - AGGATG