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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCATTTGGTTACACTAGTTGGTTATTGCATCTCAGAGCAACATAGGTTGCTTGTATATGATTATGTACCTAACAACACTCTCCATTATCATCTCCATGgtaccaaatgcctcatcttcttaaaccataaacttatccttttataactacataaacttcaatgcatgtgtatgcgcag

Basic information

species Arabidopsis thaliana
transcript AT5G38560.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G38560.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA20G20300.1 (Glycine max), 5'ss of exon 5
CGCCATTTGGTTACACTAGTTGGTTATTGCATCTCAGAGCAACATAGGTTGCTTGTATATGATTATGTACCTAACAACACTCTCCATTATCATCTCCATGgtaccaaatgcctcatcttcttaaaccataaacttatccttttataactacataaacttcaatgcatgtgtatgcgcag-----------------------
|  ||| ||||| |  | |||||||| || || || ||||| || || |||||||||||||| ||| | || ||| | ||||| |||||||||||||||||||  | |    || |||  |||||  ||     ||  |    |||| ||  ||| |   |||  |     |   ||                         
CATCATCTGGTTTCTTTGGTTGGTTACTGTATATCCGAGCATCAGAGATTGCTTGTATATGACTATATTCCCAACGATACTCTTCATTATCATCTCCATGgtaagatacatatc-tctgattaaataatttgaatagacaacaataattaattaatcacaaatttaca-acacaagctatataacatatacactgacgcagg

upper sequence: AT5G38560.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA18G51520.1 (Glycine max), 5'ss of exon 3
CGCCATTTGGTTACACTAGTTGGTTATTGCATCTCAGAGCAACATAGGTTGCTTGTATATGATTATGTACCTAACAACACTCTCCATTATCATCTCCATGgt--accaaatgcctc----------atcttcttaaaccataa-acttatccttttataact-----acataaacttcaatgcatgtgtat--gcgcag-
|| ||| ||||| |  |||||||||| || || || ||||| || || |||||||||||||| ||||| || ||| | ||||| ||||| |||||||| |||     | ||  |||          || |   || || | || | |||     | | || |     ||| || ||  ||  ||| |  |    | ||| 
CGTCATCTGGTTTCTTTAGTTGGTTACTGTATATCCGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACGATACTCTTCATTACCATCTCCACGgttagatacatatctctgattaaataatttgaatagacaacaataattaattcatcacaaatttacaacacaagctataaaacatatacactgacacagg

upper sequence: AT5G38560.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G28600.1 (Glycine max), 5'ss of exon 3
CGCCATTTGGTTACACTAGTTGGTTATTGCATCTCAGAGCAACATAGGTTGCTTGTATATGATTATGTACCTAACAACACTCTCCATTATCATCTCCATGgtac--caaatgcctc----------atcttcttaaac------cataaacttatccttttataactacataaacttcaatgcatgtgtatgcgcag---
|| ||| ||||| |  | |||||||| || || || ||||| || || |||||||||||||| ||||| || ||| | ||||| || || |||||||||||||    | ||  |||          || |   |||||       || || | ||       | || | | || ||  ||  ||| |  |     |    
CGTCATCTGGTTTCTTTGGTTGGTTACTGTATATCCGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACGATACTCTTCACTACCATCTCCATGgtaagatagatatctctgattaaataatttgaataaacaaaaataatgaattcattaccaatttacaaaacaagctataaaacatatacactgagaccgg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116453654|gb|EG496246.1|EG496246
EST:     GCTTGTATATGATTATGTACCTAACAACACTCTCCATTATCATCTCCATG                         CTCCAGGAAGACCAGTTATGACTTGGGAAACTCGGGTAAGGGTCGCTGCTG
genomic: GCTTGTATATGATTATGTACCTAACAACACTCTCCATTATCATCTCCATGgtaccaaatg ... gtatgcgcagCTCCAGGAAGACCAGTTATGACTTGGGAAACTCGGGTAAGGGTCGCTGCTG
EST: gi|116453662|gb|EG496254.1|EG496254
EST:     GCTTGTATATGATTATGTACCTAACAACACTCTCCATTATCATCTCCATG                         CTCCAGGAAGACCAGTTATGACTTGGGAAACTCGGGTAAGGGTCGCTGCTG
genomic: GCTTGTATATGATTATGTACCTAACAACACTCTCCATTATCATCTCCATGgtaccaaatg ... gtatgcgcagCTCCAGGAAGACCAGTTATGACTTGGGAAACTCGGGTAAGGGTCGCTGCTG
EST: gi|116453644|gb|EG496236.1|EG496236
EST:     GCTTGTATATGATTATGTACCTAACAACACTCTCCATTATCATCTCCATG                         CTCCAGGAAGACCAGTTATGACTTGGGAAACTCGGGTAAGGGTCGCTGCTG
genomic: GCTTGTATATGATTATGTACCTAACAACACTCTCCATTATCATCTCCATGgtaccaaatg ... gtatgcgcagCTCCAGGAAGACCAGTTATGACTTGGGAAACTCGGGTAAGGGTCGCTGCTG