1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTTGTCTAAAAACCATACAGTGTATGCAATTGATCTTCTCGGGTTTGGTGCTTCGGATAAGCCACCTGGTTTTAGCTATACCATGGAGTCATGGGCTGAGgtaaacaatctttgaaatactctggcatgtttttgttgtttaaagaagtgttttggtttggtttggtttgatttgatttattttggtgtag
species | Arabidopsis thaliana |
transcript | AT5G38520.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATACCATGGAGTCATGGGCTGAG TTGATACTCAACTTCTTGGAGGAAGTGGTTCAGAAACCGACTATTTTGATTEST: gi|125038628|gb|EL110897.1|EL110897
genomic: ATACCATGGAGTCATGGGCTGAGgtaaacaatc ... tttggtgtagTTGATACTCAACTTCTTGGAGGAAGTGGTTCAGAAACCGACTATTTTGATT
EST: CTTCGGATAAGCCACCTGGTTTTAGCTATACCATGGAGTCATGGGCTGAG TTGATACTCAACTTCTTGGAGGAAGEST: gi|86073182|gb|DR368939.1|DR368939
genomic: CTTCGGATAAGCCACCTGGTTTTAGCTATACCATGGAGTCATGGGCTGAGgtaaacaatc ... tttggtgtagTTGATACTCAACTTCTTGGAGGAAG
EST: CTTCGGATAAGCCACCTGGTTTTAGCTATACCATGGAGTCATGGGCTGAG TTGATACTCAACTTCTTGGAGGAAGTNNNNCAGAAACCGACTATTTTGATTEST: gi|86032549|gb|DR328302.1|DR328302
genomic: CTTCGGATAAGCCACCTGGTTTTAGCTATACCATGGAGTCATGGGCTGAGgtaaacaatc ... tttggtgtagTTGATACTCAACTTCTTGGAGGAAGTGGTTCAGAAACCGACTATTTTGATT
EST: CTTCGGATAAGCCACCTGGTTTTAGCTATACCATGGAGTCATGGGCTGAG TTGATACTCAACTTCTTGGAGGAAGTGGTTCAGAAACCGACTATTTTGATT
genomic: CTTCGGATAAGCCACCTGGTTTTAGCTATACCATGGAGTCATGGGCTGAGgtaaacaatc ... tttggtgtagTTGATACTCAACTTCTTGGAGGAAGTGGTTCAGAAACCGACTATTTTGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGTCTAAAAACCATACAGTGTATGCAATTGATCTTCTCGGGTTTGGTGCTTCGGATAAGCCACCTGGTTTTAGCTATACCATGGAGTCATGGGCTGAGgtaaacaatctttgaaatactctggcatgtttttgttgtttaaagaagtgttttggtttggtttggtttgatttgatttattttggtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA