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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGAGAAATAGGAGAATGACGACGCCTCCAGTTCTATCTCTCGCTCTTCCTTCAGATACTGGTCGTGTTCTTAGTATCCAATCCCACACTGTTCAGgtttttgttcgaactcttaagatttacttatcttatcattagaaactgtgtttaaagtttcaattttgattggttgcccttaagaaaaaaacagagcttt...

Basic information

species Arabidopsis thaliana
transcript AT5G37850.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125254300|gb|EL268385.1|EL268385
EST:     CGTGTTCTTAGTATCCAATCCCACACTGTTCAG                         GGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTCAATTGTTGGG-TAT
genomic: CGTGTTCTTAGTATCCAATCCCACACTGTTCAGgtttttgttc ... actttcttagGGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTCAATTGTTGGGGTAT
EST: gi|124944817|gb|EL020882.1|EL020882
EST:     ATACTGGTCGTGTTCTTAGTATCCAATCCCACACTGTTCAG                         GGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTCAATTGTTGGGGTAT
genomic: ATACTGGTCGTGTTCTTAGTATCCAATCCCACACTGTTCAGgtttttgttc ... actttcttagGGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTCAATTGTTGGGGTAT