1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGCCGCAGATTGTGCTGATGACGATGATGATAAATTGGCAATTTCTGATTTGAGGAAAAGCGTGATGGAAGAATTGAAAATGCACGACTCATTTGTACAGgtaaaatattaaggtcttccctgttttacatgctcatgtatttcatattaactggaagtagaacatcacagttaacatgagtccctaagatggaattaac...
species | Arabidopsis thaliana |
transcript | AT5G32470.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGAGGAAAAGCGTGATGGAAGAATTGAAAATGCACGACTCATTTGTACAG GATTGGGATTTAGACATCAACAAAGAAGTAAGTGTTAACTCAGCAACTTTGEST: gi|124994518|gb|EL066787.1|EL066787
genomic: TGAGGAAAAGCGTGATGGAAGAATTGAAAATGCACGACTCATTTGTACAGgtaaaatatt ... atcctcgcagGATTGGGATTTAGACATCAACAAAGAAGTAAGTGTTAACTCAGCAACTTTG
EST: AAAAGCGTGATGGAAGAATTGAAAAATGCACGACTCATTTGTACAG GATTGGGATTTAGACATCAACAAAGAAGTAAGTGTTAACTCAGCAACTTTGEST: gi|125309708|gb|EL323793.1|EL323793
genomic: AAAAGCGTGATGGAAGAATTG-AAAATGCACGACTCATTTGTACAGgtaaaatatt ... atcctcgcagGATTGGGATTTAGACATCAACAAAGAAGTAAGTGTTAACTCAGCAACTTTG
EST: AAAAGCGTGATGGAAGAATTGAAAATGCACGACTCATTTGTACAG GATTGGGATTTAGACATCAACAAAGAAGTAAGTGTTAACTCAGCAACTTTG
genomic: AAAAGCGTGATGGAAGAATTGAAAATGCACGACTCATTTGTACAGgtaaaatatt ... atcctcgcagGATTGGGATTTAGACATCAACAAAGAAGTAAGTGTTAACTCAGCAACTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCGCAGATTGTGCTGATGACGATGATGATAAATTGGCAATTTCTGATTTGAGGAAAAGCGTGATGGAAGAATTGAAAATGCACGACTCATTTGTACAGgtaaaatattaaggtcttccctgttttacatgctcatgtatttcatattaactggaagtagaacatcacagttaacatgagtccctaagatggaattaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagtagaa