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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTGTGGTTCACCCCGTACAACCAAACAGAGAGCCCCTTCTAACTTAGGTTCTACTCTCAAAGTAGTCAACGAGCCTGTTAAAGAGCCTATACCTCAGgtttcttttcctctttttcttccttctttatatatatatagtaatggaatggagttaactcactgatttcttaacttgaaatgattctag

Basic information

species Arabidopsis thaliana
transcript AT5G28900.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116435328|gb|EG477920.1|EG477920
EST:     GTTCTACTCTCAAAGTAGTCAACGAGCCTGTTAAAGAGCCTATACCTCAG                         TTTTATTTCCAAAATGGTCGCCCTCCACCAAGCGAGATTAAAGAGCAATGT
genomic: GTTCTACTCTCAAAGTAGTCAACGAGCCTGTTAAAGAGCCTATACCTCAGgtttcttttc ... atgattctagTTTTATTTCCAAAATGGTCGCCCTCCACCAAGCGAGATTAAAGAGCAATGT
EST: gi|86070919|gb|DR366676.1|DR366676
EST:     GTTCTACTCTCAAAGTAGTCAACGAGCCTGTTAAAGAGCCTATACCTCAG                         TTTTATTTCCAAAATGGTCGCCCTCCACCAAGCGAGATTAAAGAGCAATGT
genomic: GTTCTACTCTCAAAGTAGTCAACGAGCCTGTTAAAGAGCCTATACCTCAGgtttcttttc ... atgattctagTTTTATTTCCAAAATGGTCGCCCTCCACCAAGCGAGATTAAAGAGCAATGT
EST: gi|86070920|gb|DR366677.1|DR366677
EST:     GTTCTACTCTCAAAGTAGTCAACGAGCCTGTTAAAGAGCCTATACCTCAG                         TTTTATTTCCAAAATGGTCGCCCTCCACCAAGCGAGATTAAAGAGCAATGT
genomic: GTTCTACTCTCAAAGTAGTCAACGAGCCTGTTAAAGAGCCTATACCTCAGgtttcttttc ... atgattctagTTTTATTTCCAAAATGGTCGCCCTCCACCAAGCGAGATTAAAGAGCAATGT