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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGATAGTGATCGAGGTATCTCTTGCACTTTTGGAGCTGATAAAGTCGCTGAGTTCTTGGATAAGAATGATCTTGACCTCATTTGCCGAGGCCATCAGgtaaaacaaacaagacctcctcgaaacctgtgaaattgttcttgatggtttgattagcgtttgtccataaagctagagactttttgaattcttaccatatcggacatgtgtaatggttttgtgatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G27840.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G27840.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G120202_T01 (Zea mays), 5'ss of exon 2
GGCTGATAGTGATCGAGGTATCTCTTGCACTTTTGGAGCTGATAAAGTCGCTGAGTTCTTGGATAAGAATGATCTTGACCTCATTTGCCGAGGCCATCAGgtaaaacaaacaagacctcctcgaaacctgtgaaattgttcttgatggtttgatta-gcgtttgtccataaagctagagactttttgaattcttaccatatcggacatgtgtaatggttttgtgatgcag
||  || |||||| ||||| | |||||||||||||| || |||||  | | ||| || ||||| |||||||||||||||||  | ||| |||  ||||||||||   |||  |   |  |    |  |  |    |   | ||  |  |    | | | ||||     |  | ||   |   ||  | ||| ||  | |                               
GGGGGAGAGTGATAGAGGTGTTTCTTGCACTTTTGGCGCAGATAAGCTTGTTGAATTTTTGGAGAAGAATGATCTTGACCTTGTGTGCAGAGCTCATCAGgtaaccaaaagtatttcaaccattagtccttattctcaatttttgttatagagtgatgtgtttaagtgtgtaactgttg---ttggggatttttctcctgctt---------------------------

upper sequence: AT5G27840.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA03G39440.1 (Glycine max), 5'ss of exon 2
GGCTGATAGTGATCGAGGTATCTCTTGCACTTTTGGAGCTGATAAAGTCGCTGAGTTCTTGGATAAGAATGATCTTGACCTCATTTGCCGAGGCCATCAGgtaaaacaaacaagacctcctcgaaacctgtgaaattgttcttgatggtttgattagcgtttgtccataaagctagagactttttgaattcttaccatatcggacatgtgtaatggttttgtgatgcag
||| || ||||| |||||  | || || |||||||||||||||  ||| || ||||| |||||||| ||||| ||||| ||  ||||| |||| ||||||||||| |   ||   | |  | | |   ||   ||  | |  |        || |||   |||          |  | | || | | |||||||    | ||    |   | || |             
GGCAGAGAGTGACCGAGGAGTTTCATGTACTTTTGGAGCTGATGTAGTTGCAGAGTTTTTGGATAAAAATGACCTTGATCTTGTTTGCAGAGGGCATCAGgtaaacctctcatttcatttttgcagattg---aacaggttata-------gaatagaagttg------ggaatccatatttgtggtattcttataggagcgattctaattgattg-------------

upper sequence: AT5G27840.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv14s0060g01750.t01 (Vitis vinifera), 5'ss of exon 2
GGCTGATAGTGATCGAGGTATCTCTTGCACTTTTGGAGCTGATAAAGTCGCTGAGTTCTTGGATAAGAATGATCTTGACCTCATTTGCCGAGGCCATCAGgtaaaacaaacaagacctcctcgaaacctgtgaaattgttcttgatggtttgattagcgtttgtccataaagctagagactttttgaattcttaccatatcggacatgtgtaatggttttgtgatgcag
||| ||||||||||||||| | ||||| || |||||||||||||| || ||||| || ||||| |||||||||||||| |||||||||||||| ||||||||||   ||      |    ||  ||    ||| |   ||| || |  |||   || | ||  || ||| || |       |||| |   | | |||  ||    | |                     
GGCAGATAGTGATCGAGGTGTTTCTTGTACCTTTGGAGCTGATAAGGTTGCTGAATTTTTGGACAAGAATGATCTTGATCTCATTTGCCGAGGTCATCAGgtaagcaaagt---tctcattcacaatgcttgataacattcatg-tacttttccta-ctttgttctatatagttg------ttttaagagcatcccaattcattaaagcca------------------