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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATGgtaagttactagacaaacttagggtttttttccttctttcttgtttgcgttaaagtttcaatttttattaactgaaagctgttgttttgattttatag

Basic information

species Arabidopsis thaliana
transcript AT5G27720.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86050911|gb|DR346666.1|DR346666
EST:     GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG                         CTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
genomic: GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATGgtaagttact ... gattttatagCTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
EST: gi|86050917|gb|DR346672.1|DR346672
EST:     GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG                         CTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
genomic: GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATGgtaagttact ... gattttatagCTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
EST: gi|164072209|gb|ES175279.1|ES175279
EST:     GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG                         CTTCCTCTATCGCTGCTTAAAACT
genomic: GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATGgtaagttact ... gattttatagCTTCCTCTATCGCTGCTTAAAACT
EST: gi|47831834|gb|CK121518.1|CK121518
EST:     GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG                         CTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
genomic: GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATGgtaagttact ... gattttatagCTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
EST: gi|47832106|gb|CK121790.1|CK121790
EST:     GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG                         CTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
genomic: GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATGgtaagttact ... gattttatagCTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
EST: gi|116449433|gb|EG492025.1|EG492025
EST:     GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG                         CTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
genomic: GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATGgtaagttact ... gattttatagCTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
EST: gi|86050907|gb|DR346662.1|DR346662
EST:     GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG                         CTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
genomic: GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATGgtaagttact ... gattttatagCTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
EST: gi|86050915|gb|DR346670.1|DR346670
EST:     GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG                         CTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
genomic: GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATGgtaagttact ... gattttatagCTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
EST: gi|86050918|gb|DR346673.1|DR346673
EST:     GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG                         CTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
genomic: GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATGgtaagttact ... gattttatagCTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
EST: gi|116480858|gb|EG523450.1|EG523450
EST:     GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG                         CTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATTCTATG
genomic: GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATGgtaagttact ... gattttatagCTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
EST: gi|86050914|gb|DR346669.1|DR346669
EST:     GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG                         CTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
genomic: GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATGgtaagttact ... gattttatagCTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
EST: gi|116480849|gb|EG523441.1|EG523441
EST:     GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG                         CTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
genomic: GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATGgtaagttact ... gattttatagCTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
EST: gi|86050916|gb|DR346671.1|DR346671
EST:     GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATG                         CTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG
genomic: GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATGgtaagttact ... gattttatagCTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATGgtaagttactagacaaacttagggtttttttccttctttcttgtttgcgttaaagtttcaatttttattaactgaaagctgttgttttgattttatag

- - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - AAGATG