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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGCCATTGGAAGGTGATTGTAAGCTTGAGCTTTTCAAATTTGATAGCGATAAAGGTCGTGATACTCTTTGGCATTCTAGTGCGCACATTCTTGGTCAGgtaaaggagttttgatcttatctgatttgtgaaagttttggttgtggtgaacgaacgagttgtttactgtggttgtgggttgatcttggtgcag

Basic information

species Arabidopsis thaliana
transcript AT5G26830.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116437571|gb|EG480163.1|EG480163
EST:     ATAAAGGTCGTGATACTCTTTGGCATTCTAGTGCGCACATTCTTGGTCAG                         GCTCTCGAGCAGGA
genomic: ATAAAGGTCGTGATACTCTTTGGCATTCTAGTGCGCACATTCTTGGTCAGgtaaaggagt ... cttggtgcagGCTCTCGAGCAGGA
EST: gi|116437531|gb|EG480123.1|EG480123
EST:     ATAAAGGTCGTGATACTCTTTGGCATTCTAGTGCGCACATTCTTGGTCAG                         GCTCTCGAGCAGGA
genomic: ATAAAGGTCGTGATACTCTTTGGCATTCTAGTGCGCACATTCTTGGTCAGgtaaaggagt ... cttggtgcagGCTCTCGAGCAGGA