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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGAAGGCGGCAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatttgcatgattcctataaattaagttttacgtatccatatgattttttttttgtccaaatgacgtatcatattacgtatccatatgatatgaaatatttcttatgtatatatgtctctatacattcatagtaatgtcattatatacgtacgctatcag

Basic information

species Arabidopsis thaliana
transcript AT5G25980.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116450039|gb|EG492631.1|EG492631
EST:     TTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
genomic: TTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
EST: gi|47831614|gb|CK121298.1|CK121298
EST:     CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
genomic: CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
EST: gi|47828775|gb|CK118459.1|CK118459
EST:     CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
genomic: CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
EST: gi|116459414|gb|EG502006.1|EG502006
EST:     CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
genomic: CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
EST: gi|116459426|gb|EG502018.1|EG502018
EST:     CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
genomic: CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
EST: gi|116410417|gb|EG453009.1|EG453009
EST:     CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
genomic: CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
EST: gi|116477703|gb|EG520295.1|EG520295
EST:     CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
genomic: CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
EST: gi|116400371|gb|EG442963.1|EG442963
EST:     CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
genomic: CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
EST: gi|116410415|gb|EG453007.1|EG453007
EST:     CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
genomic: CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
EST: gi|125011896|gb|EL084165.1|EL084165
EST:     CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAG
genomic: CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAG
EST: gi|116459408|gb|EG502000.1|EG502000
EST:     CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
genomic: CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
EST: gi|47829862|gb|CK119546.1|CK119546
EST:     CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
genomic: CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
EST: gi|116439048|gb|EG481640.1|EG481640
EST:     CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
genomic: CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
EST: gi|47828808|gb|CK118492.1|CK118492
EST:     CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
genomic: CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
EST: gi|116439115|gb|EG481707.1|EG481707
EST:     CAGAGGTCGTGGACTTAACGTTCGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
genomic: CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
EST: gi|47828824|gb|CK118508.1|CK118508
EST:     CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
genomic: CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
EST: gi|116477702|gb|EG520294.1|EG520294
EST:     CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
genomic: CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
EST: gi|125308618|gb|EL322703.1|EL322703
EST:     CTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
genomic: CTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
EST: gi|116444211|gb|EG486803.1|EG486803
EST:     CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
genomic: CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
EST: gi|116410414|gb|EG453006.1|EG453006
EST:     CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
genomic: CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
EST: gi|124763796|gb|EH853926.1|EH853926
EST:     ACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACCTGTGACTCATACC
genomic: ACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
EST: gi|124805269|gb|EH892726.1|EH892726
EST:     CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGA
genomic: CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGA
EST: gi|47829256|gb|CK118940.1|CK118940
EST:     CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
genomic: CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
EST: gi|116410418|gb|EG453010.1|EG453010
EST:     CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAG                         AGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC
genomic: CAGAGGTCGTGGACTTAACGTTTGGGATGGCTTCACTCACCGATACCCAGgtttgtcatt ... acgctatcagAGAAAGGTGGAGCCGATTTGGGCAATGGAGACACTACTTGTGACTCATACC