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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGAAGTTGAAGTGAGTCCACCTCAACCACTTGAGATCAGAATTAAAGTTGTATGTACATCTCTCTGTCGTAGTGATCTCTCTGCTTGGGAATCTCAGgtttgcagtttctcttctttactataacctgttcatgtatttggctttataagtgtctctgatgaagtctccatttatggtacag

Basic information

species Arabidopsis thaliana
transcript AT5G24760.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G24760.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA16G23820.1 (Glycine max), 5'ss of exon 2
GGAGGAAGTTGAAGTGAGTCCACCTCAACCACTTGAGATCAGAATTAAAGTTGTATGTACATCTCTCTGTCGTAGTGATCTCTCTGCTTGGGAATCTCAGgt-----ttgcagtt-tctcttctttactataacctgttcatgtatttggctttataagtgtctctga-----tgaagtctccatttatggtacag-----
 |||||||| ||||||||||| ||||||||| | ||||| || ||||| ||||| |  || ||||||||||| ||||||||||| |||||||||||||| ||     | |  ||| |||   ||||| |  ||  | ||  |  ||    |||   | |  ||| |       ||||   || | ||    |  |      
AGAGGAAGTGGAAGTGAGTCCTCCTCAACCAATGGAGATTAGGATTAAGGTTGTCTCCACTTCTCTCTGTCGCAGTGATCTCTCCGCTTGGGAATCTCATgtaagtctggttgttatcttgcctttaatggaaaat-ttgtttcataaaacttcgcatggttcttttggagtgtgaaacttcaaattgaattggaataaat

upper sequence: AT5G24760.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA09G29070.1 (Glycine max), 5'ss of exon 2
GGAGGAAGTTGAAGTGAGTCCACCTCAACCACTTGAGATCAGAATTAAAGTTGTATGTACATCTCTCTGTCGTAGTGATCTCTCTGCTTGGGAATCTCAGgtttgcagtttctcttctttactataacctgttcatgtatttggctttataagtgtctctgatgaagtctc-----catttatggtacag-------------
||||||||| ||||||||||| || |||||| | ||||| || ||||| ||||| |  || ||||||||||| ||||||||||| |||||||||||||| ||    ||| |    |  |||  ||  | |        | || |||| ||||   | ||    ||  | |      ||| | | |   |              
GGAGGAAGTAGAAGTGAGTCCTCCCCAACCAATGGAGATTAGGATTAAGGTTGTCTCCACCTCTCTCTGTCGCAGTGATCTCTCCGCTTGGGAATCTCATgta---agtcttgacttgttatcatgtctttaatggagaatttgcttcataaaactttccatggatctttttgaatcatatgttgggtaacaagtgaccagca