1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CACAACAACGTTATCCCGAGCTCACACTTTCGCAAGCACTGGCAGAATTATGTCAAGACTTGGTTTAACCAGCCTGCCAGGAAGACAAGGAGACGTGTTGgttagtaaagtctctacattttctactttaaatgattttgctcttaattttaatagtgtatgtttcttttgtgtgatgtgttttctcag
species | Arabidopsis thaliana |
transcript | AT5G23900.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGACAAGGAGACGTGTTG CTAGACAGAAGAAGGCTGTGAAGATCTTCCCTCGTCCCACCTCTGGTCCTCEST: gi|124958655|gb|EL033385.1|EL033385
genomic: AAGACAAGGAGACGTGTTGgttagtaaag ... gttttctcagCTAGACAGAAGAAGGCTGTGAAGATCTTCCCTCGTCCCACCTCTGGTCCTC
EST: CAAGACTTGGTTTAACCAGCCTGCCAGGAAGACAAGGAGACGTGT-G CTAGACAGAAGAAGGCT
genomic: CAAGACTTGGTTTAACCAGCCTGCCAGGAAGACAAGGAGACGTGTTGgttagtaaag ... gttttctcagCTAGACAGAAGAAGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACAACAACGTTATCCCGAGCTCACACTTTCGCAAGCACTGGCAGAATTATGTCAAGACTTGGTTTAACCAGCCTGCCAGGAAGACAAGGAGACGTGTTGgttagtaaagtctctacattttctactttaaatgattttgctcttaattttaatagtgtatgtttcttttgtgtgatgtgttttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA