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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATTTTCTCTCCGATCATTACCCATTTTGGAACAGGAGTCAAGGCTCTGACCACGTCTTCGTCGCTTCCCATGACTTTGGCGCATGCTTCCACGCAATGgtaagctccaaagtcctcatgtttaagggcttccatgcctaaagtttgtttttttaattgatttttgattggtttgtgttctgtgaag

Basic information

species Arabidopsis thaliana
transcript AT5G22940.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G22940.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G113245_T01 (Zea mays), 5'ss of exon 1
CGATTTTCTCTCCGATCATTACCCATTTTGGAACAGGAGTCAAGGCTCTGACCACGTCTTCGTCGCTTCCCATGACTTTGGCGCATGCTTCCACGCAATGgtaagctccaaagtcctcatgtttaagggcttccatgcctaaagtttgtttttttaattgatttttgattggtttgtgttctgtgaag--------------
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CGACCTCGTCCAGGCCGGGATGCCGTATTGGAATCGCTCCGCCGGGGCCGACCACGTCTTCGTCGCCTCCCACGACTTCGGCGCCTGCTTCCATCCCATGgtgagcgtgtccggcgaaaagctcccgactttttctgggctcagtttgttgcggtgggtggttgc-gtcctgcttgcgcacc-taaatccattgcgtgtaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164222107|gb|ES071661.1|ES071661
EST:     CCATGACTTTGGCGCATGCTTCCACGCAATG                         GAGGATATGGCTATAGAGGAAGGGATTCCAAAATTTATGAAGAGATC
genomic: CCATGACTTTGGCGCATGCTTCCACGCAATGgtaagctcca ... ttctgtgaagGAGGATATGGCTATAGAGGAAGGGATTCCAAAATTTATGAAGAGATC