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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGATCAAAGAAAACAGCTGAAATCATATGGGGAAGTAGAGAAAGTGAGATGATTTTCGATTACGATCTCAGAGAAATCGATCTCTACTCTTTTCAAgtaagtgtagctgtgatagggagatatagattcacatagaacagttatcgtagttgttcttaactcttgttctagttgatggttatatactag

Basic information

species Arabidopsis thaliana
transcript AT5G22620.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124975183|gb|EL048696.1|EL048696
EST:     GATGATTTTTCGATTACGATCTCAGAGAAATCGATCTCTACTCTTTTCAA                         GGTCTACTTAAGAAAGAAGGGAAAGAGAAGTTTGGGGAAGCTTTTTAAGC
genomic: GATGA-TTTTCGATTACGATCTCAGAGAAATCGATCTCTACTCTTTTCAAgtaagtgtag ... tatatactagGGTCTACTTAAGAAAGAAGGGAAAGAGAAGTTTGGGGAAGCTTTT-AAGC
EST: gi|125314870|gb|EL328955.1|EL328955
EST:     AGATGATTTTCGATTACGATCTCAGAGAAATCGATCTCTACTCTTTTCAA                         GGTCTACTTAAGAAAGAAGGGAAAGAGAAGTTTGGGGAAG
genomic: AGATGATTTTCGATTACGATCTCAGAGAAATCGATCTCTACTCTTTTCAAgtaagtgtag ... tatatactagGGTCTACTTAAGAAAGAAGGGAAAGAGAAGTTTGGGGAAG