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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTTTATTCGTGATTTCATACCTTCGGGGATCGCCTTTCTTCTTAAAGGAGAGTATGATATTGTTCGCAATTTCATCCTTTACACTCTCCAGTTACAGgtaatagagtctttctttgataagtgcagatggaagcaatagtatgatgttgtcaaatgtttttgtggttaaggaaatatgattgtagtagtaacctctttttgttgcaccgagttcagtgtagattgatacgtagcagttatttggttttgttatgagctgatatgatgcttattcctgaccag

Basic information

species Arabidopsis thaliana
transcript AT5G22510.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G22510.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os02g32730.1 (Oryza sativa), 5'ss of exon 2
GGTCTTTATTCGTGATTTCATACCTTCGGGGATCGCCTTTCTTCTTAAAGGAGAGTATGATATTGTTCGCAATTTCATCCTTTACACTCTCCAGTTACAGgtaatagagtctttctttgataagtgcagatggaagcaatagtatgatgttgtcaaatgtttttgtggttaaggaaat-atgattgtagtagtaacctctttttgttgcaccgagttcagtgtagattgatacgtagcagttatttggttttgttatgagctgatatgatgcttattcctgaccag
||| |||||||| ||||||||||| || || ||||| |||||  | || |||||||| || ||||| |||||||||||  |  |||| || ||| | |||||| | |  || ||  ||  | | ||  |      |   |||    | |   |  | || |   |||     | |||| |  |||   ||| |||  |  ||                                                                                    
GGTGTTTATTCGGGATTTCATACCATCTGGCATCGCGTTTCTATTGAAGGGAGAGTACGAAATTGTGCGCAATTTCATTTTGCACACCCTTCAGCTTCAGgtacttgcttcgttgcttcctcattgttgcatcgtgttttagatccaggccttgtattgatc--gtgacagtgtaaatgaacattccggtaataaaattatt------------------------------------------------------------------------------------

upper sequence: AT5G22510.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv06s0061g01520.t01 (Vitis vinifera), 5'ss of exon 3
GGTCTTTATTCGTGATTTCATACCTTCGGGGATCGCCTTTCTTCTTAAAGGAGAGTATGATATTGTTCGCAATTTCATCCTTTACACTCTCCAGTTACAGgtaatagagtctttctttgataagtgcagatggaagcaatagtatgatgttgtcaaatgtttttgtggttaaggaaatatgattgtagtagtaacctctttttgttgcaccgagttcagtgtagattgatacgtagcagttatttggttttgttatgagctgatatgatgcttattcctgaccag
|||||||||||||||||| |||||||| || || || |||||  | || |||||||||||||| || || |  ||||||||| |||| || || || ||||||    | |  | || |   || |    ||  || | ||| || || | |  |     |  || |||     ||| || | |  |  | || |  | || |  |                                                                                
GGTCTTTATTCGTGATTTTATACCTTCTGGCATAGCTTTTCTCTTGAAGGGAGAGTATGATATCGTACGGAGCTTCATCCTTCACACCCTTCAATTGCAGgtacagtaatagtcctctcccaattatcaatttaa-ctataata-gacggttacttgcatcattttgg-----gaattagggtctttttggtcagttattgtgatga------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116428552|gb|EG471144.1|EG471144
EST:     CATCCTTTACACTCTCCAGTTACAG                         AGTTGGGAGAAAACCATGGATTGCCATAGTCCAGGTCAAGGTTTGATGCCT
genomic: CATCCTTTACACTCTCCAGTTACAGgtaatagagt ... tcctgaccagAGTTGGGAGAAAACCATGGATTGCCATAGTCCAGGTCAAGGTTTGATGCCT
EST: gi|116428540|gb|EG471132.1|EG471132
EST:     AGAGTATGATATTGTTCGCAAATTTCATCCTTTACACTCTCCAGTTACAG                         AGTTGGGAGAAAAACCATGGATTGCCATAGTCCAGGTCAAAGGTTTGATGC
genomic: AGAGTATGATATTGTTCGCAA-TTTCATCCTTTACACTCTCCAGTTACAGgtaatagagt ... tcctgaccagAGTTGGGAGAAAA-CCATGGATTGCCATAGTCCAGGTCAA-GGTTTGATGC
EST: gi|164027871|gb|ES072615.1|ES072615
EST:     GTATGATATTGTTCGCAATTTCATCCTTTACACTCTCCAGTTACAG                         AGTTGGGAGAAAACCATGGATTGCCATA
genomic: GTATGATATTGTTCGCAATTTCATCCTTTACACTCTCCAGTTACAGgtaatagagt ... tcctgaccagAGTTGGGAGAAAACCATGGATTGCCATA
EST: gi|116428487|gb|EG471079.1|EG471079
EST:     GAGAGTATGATATTGTTCGCAATTTCATCCTTTACACTCTCCAGTTACAG                         AGTTGGGAGAAAACCATGGATTGCCATAGTCCAGGTCAAGGTTTGATGCTT
genomic: GAGAGTATGATATTGTTCGCAATTTCATCCTTTACACTCTCCAGTTACAGgtaatagagt ... tcctgaccagAGTTGGGAGAAAACCATGGATTGCCATAGTCCAGGTCAAGGTTTGATGCCT
EST: gi|116428537|gb|EG471129.1|EG471129
EST:     GAGAGTATGATATTGTTCGCAATTTCATCCTTTACACTCTCCAGTTACAG                         AGTTGGGAGAAAACCATGGATTGCCATAGTCCAGGTCAAGGTTTGATGCCT
genomic: GAGAGTATGATATTGTTCGCAATTTCATCCTTTACACTCTCCAGTTACAGgtaatagagt ... tcctgaccagAGTTGGGAGAAAACCATGGATTGCCATAGTCCAGGTCAAGGTTTGATGCCT
EST: gi|116428488|gb|EG471080.1|EG471080
EST:     GAGAGTATGATATTGTTCGCAATTTCATCCTTTACACTCTCCAGTTACAG                         AGTTGGGAGAAAACCATGGATTGCCATAGTCCAGGTCAAGGTTTGATGCTT
genomic: GAGAGTATGATATTGTTCGCAATTTCATCCTTTACACTCTCCAGTTACAGgtaatagagt ... tcctgaccagAGTTGGGAGAAAACCATGGATTGCCATAGTCCAGGTCAAGGTTTGATGCCT
EST: gi|116428545|gb|EG471137.1|EG471137
EST:     GAGAGTATGATATTGTTCGCAATTTCATCCTTTACACTCTCCAGTTACAG                         AGTTGGGAGAAAACCATGGATTGCCATAGTCCAGGTCAAGGTTTGATGCCT
genomic: GAGAGTATGATATTGTTCGCAATTTCATCCTTTACACTCTCCAGTTACAGgtaatagagt ... tcctgaccagAGTTGGGAGAAAACCATGGATTGCCATAGTCCAGGTCAAGGTTTGATGCCT
EST: gi|116428380|gb|EG470972.1|EG470972
EST:     GAGAGTATGATATTGTTCGCAATTTCATCCTTTACACTCTCCAGTTACAG                         AGTTGGGAGAAAACCATGGATTGCCATAGTCCAGGTCAAGGTTTGATGCCT
genomic: GAGAGTATGATATTGTTCGCAATTTCATCCTTTACACTCTCCAGTTACAGgtaatagagt ... tcctgaccagAGTTGGGAGAAAACCATGGATTGCCATAGTCCAGGTCAAGGTTTGATGCCT
EST: gi|116428546|gb|EG471138.1|EG471138
EST:     GAGAGTATGATATTGTTCGCAATTTCATCCTTTACACTCTCCAGTTACAG                         AGTTGGGAGAAAACCATGGATTGCCATAGTCCAGGTCAAGGTTTGATGCCT
genomic: GAGAGTATGATATTGTTCGCAATTTCATCCTTTACACTCTCCAGTTACAGgtaatagagt ... tcctgaccagAGTTGGGAGAAAACCATGGATTGCCATAGTCCAGGTCAAGGTTTGATGCCT
EST: gi|124961515|gb|EL036037.1|EL036037
EST:     GAGAGTATGATATTGTTCGCAATTTCATCCTTTACACTCTCCAGTTACAG                         AGTTGGGAGAAAACCATGG
genomic: GAGAGTATGATATTGTTCGCAATTTCATCCTTTACACTCTCCAGTTACAGgtaatagagt ... tcctgaccagAGTTGGGAGAAAACCATGG
EST: gi|116428370|gb|EG470962.1|EG470962
EST:     GAGAGTATGATATTGTTCGCAATTTCATCCTTTACACTCTCCAGTTACAG                         AGTTGGGAGAAAACCATGGATTGCCATAGTCCAGGTCAAGGTTTGATGCCT
genomic: GAGAGTATGATATTGTTCGCAATTTCATCCTTTACACTCTCCAGTTACAGgtaatagagt ... tcctgaccagAGTTGGGAGAAAACCATGGATTGCCATAGTCCAGGTCAAGGTTTGATGCCT