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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCAAATTTGTTTCAGGGAGTACCAAAATGAGgtttgtttactcaaatcaactttattttgttttctgctaatgattcagatgaatgttgatttggtataatggtagataggatttgaggtgaaaaagtttg...

Basic information

species Arabidopsis thaliana
transcript AT5G22440.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116413764|gb|EG456356.1|EG456356
EST:     GAAGCAAATTTGTTTCAGGGAGTACCAAAATGAG                         TAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA
genomic: GAAGCAAATTTGTTTCAGGGAGTACCAAAATGAGgtttgtttac ... aatggtgtagTAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA
EST: gi|86049654|gb|DR345409.1|DR345409
EST:     GAAGCAAATTTGTTTCAGGGAGTACCAAAATGAG                         TAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA
genomic: GAAGCAAATTTGTTTCAGGGAGTACCAAAATGAGgtttgtttac ... aatggtgtagTAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA
EST: gi|86049657|gb|DR345412.1|DR345412
EST:     GAAGCAAATTTGTTTCAGGGAGTACCAAAATGAG                         TAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA
genomic: GAAGCAAATTTGTTTCAGGGAGTACCAAAATGAGgtttgtttac ... aatggtgtagTAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA
EST: gi|86049659|gb|DR345414.1|DR345414
EST:     GAAGCAAATTTGTTTCAGGAAGTACCAAAATGAG                         TAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA
genomic: GAAGCAAATTTGTTTCAGGGAGTACCAAAATGAGgtttgtttac ... aatggtgtagTAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA
EST: gi|164132764|gb|ES030797.1|ES030797
EST:     GAAGCAAATTTGTTTCAGGGAGTACCAAAATGAG                         TAAGCTTCAGAGTGAAGCCGTGAGAGAGG
genomic: GAAGCAAATTTGTTTCAGGGAGTACCAAAATGAGgtttgtttac ... aatggtgtagTAAGCTTCAGAGTGAAGCCGTGAGAGAGG
EST: gi|116413756|gb|EG456348.1|EG456348
EST:     GAAGCAAATTTGTTTCAGGGAGTACCAAAATGAG                         TAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA
genomic: GAAGCAAATTTGTTTCAGGGAGTACCAAAATGAGgtttgtttac ... aatggtgtagTAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA
EST: gi|86049655|gb|DR345410.1|DR345410
EST:     GAAGCAAATTTGTTTCAGGAAGTACCAAAATGAG                         TAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA
genomic: GAAGCAAATTTGTTTCAGGGAGTACCAAAATGAGgtttgtttac ... aatggtgtagTAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA
EST: gi|86049653|gb|DR345408.1|DR345408
EST:     GAAGCAAATTTGTTTCAGGAAGTACCAAAATGAG                         TAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA
genomic: GAAGCAAATTTGTTTCAGGGAGTACCAAAATGAGgtttgtttac ... aatggtgtagTAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA
EST: gi|164138525|gb|EL983126.1|EL983126
EST:     CAGGGAGTACCAAAATGAG                         TAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTC
genomic: CAGGGAGTACCAAAATGAGgtttgtttac ... aatggtgtagTAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTC
EST: gi|86049652|gb|DR345407.1|DR345407
EST:     GAAGCAAATTTGTTTCAGGGAGTACCAAAATGAG                         TAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA
genomic: GAAGCAAATTTGTTTCAGGGAGTACCAAAATGAGgtttgtttac ... aatggtgtagTAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA
EST: gi|124920705|gb|EH994394.1|EH994394
EST:     GAAGCAAATTTGTTTCAGGGAGTACCAAAAATGAG                         TAAGCTTCAGAGTGAAG
genomic: GAAGCAAATTTGTTTCAGGGAGTACCAAAA-TGAGgtttgtttac ... aatggtgtagTAAGCTTCAGAGTGAAG
EST: gi|86049658|gb|DR345413.1|DR345413
EST:     GAAGCAAATTTGTTTCAGGAAGTACCAAAATGAG                         TAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA
genomic: GAAGCAAATTTGTTTCAGGGAGTACCAAAATGAGgtttgtttac ... aatggtgtagTAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA
EST: gi|86049656|gb|DR345411.1|DR345411
EST:     GAAGCAAATTTGTTTCAGGAAGTACCAAAATGAG                         TAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA
genomic: GAAGCAAATTTGTTTCAGGGAGTACCAAAATGAGgtttgtttac ... aatggtgtagTAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA
EST: gi|116439442|gb|EG482034.1|EG482034
EST:     GAAGCAAATTTGTTTCAGGGAGTACCAAAATGAG                         TAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA
genomic: GAAGCAAATTTGTTTCAGGGAGTACCAAAATGAGgtttgtttac ... aatggtgtagTAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGCAAATTTGTTTCAGGGAGTACCAAAATGAGgtttgtttactcaaatcaactttattttgttttctgctaatgattcagatgaatgttgatttggtataatggtagataggatttgaggtgaaaaagtttg

 AAGCAA