1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGATTTGGGAAATTCAAACCTCTCTGGACATCTTGCGCCTGAGCTTGGGAAGCTTGAACATTTACAGTATCTgtatgccatcactcttttgacttttacttatccgaaatttataatggaattaacattgtataccatataatgcacataaactgtttactttgagattggttatgttatagacaatgtaagactaactcttaacttgtcctatgattgatgcag
species | Arabidopsis thaliana |
transcript | AT5G21090.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTTACAGTATCT AGAGCTCTACAAAAACAACATCCGAGGAACTATACCTTCCGAACTTGGAAAEST: gi|125082634|gb|EL143469.1|EL143469
genomic: TTTACAGTATCTgtatgccatc ... attgatgcagAGAGCTCTACAAAAACAACATCCAAGGAACTATACCTTCCGAACTTGGAAA
EST: TGAGCTTGGGAAGCTTGAACATTTACAGTATCT AGAGCTCTACAAAA-CAACATCCAAGGAACTATACCTTCCGAACTTGGAAAEST: gi|116443563|gb|EG486155.1|EG486155
genomic: TGAGCTTGGGAAGCTTGAACATTTACAGTATCTgtatgccatc ... attgatgcagAGAGCTCTACAAAAACAACATCCAAGGAACTATACCTTCCGAACTTGGAAA
EST: TCTGGACATCTTGCGCCTGAGCTTGGGAAGCTTGAACATTTACAGTATCT AGAGCTCTACAAAAACAACATCCAAGGAACTATACCTTCCGAACTTGGAAAEST: gi|124798199|gb|EH887878.1|EH887878
genomic: TCTGGACATCTTGCGCCTGAGCTTGGGAAGCTTGAACATTTACAGTATCTgtatgccatc ... attgatgcagAGAGCTCTACAAAAACAACATCCAAGGAACTATACCTTCCGAACTTGGAAA
EST: TCTGGACATCTTGCGCCTGAGCTTGGGAAGCTTGAACATTTACAGTATCT AGAGCTCTACAAAAACAACATCCAAGGAACTATACCTTCCGAACTEST: gi|125047199|gb|EL119468.1|EL119468
genomic: TCTGGACATCTTGCGCCTGAGCTTGGGAAGCTTGAACATTTACAGTATCTgtatgccatc ... attgatgcagAGAGCTCTACAAAAACAACATCCAAGGAACTATACCTTCCGAACT
EST: TCTGGACATCTTGCGCCTGAGCTTGGGAAGCTTGAACATTTACAGTATCT AGAGCTCTACAAAAACAACATCCAAGGAACTATACCTTCCGEST: gi|124706483|gb|EH797885.1|EH797885
genomic: TCTGGACATCTTGCGCCTGAGCTTGGGAAGCTTGAACATTTACAGTATCTgtatgccatc ... attgatgcagAGAGCTCTACAAAAACAACATCCAAGGAACTATACCTTCCG
EST: TTTACAGTATCT AGAGCTCTACAAAAACAACATCCAAGGAACTATACCTTCCGAACTTGGAAAEST: gi|116456652|gb|EG499244.1|EG499244
genomic: TTTACAGTATCTgtatgccatc ... attgatgcagAGAGCTCTACAAAAACAACATCCAAGGAACTATACCTTCCGAACTTGGAAA
EST: TCTGGACATCTTGCGCCTGAGCTTGGGAAGCTTGAACATTTACAGTATCT AGAGCTCTACAAAAACAACATCCAAGGAACTATACCTTCCGAACTTGGAAAEST: gi|301501628|gb|HO207168.1|HO207168
genomic: TCTGGACATCTTGCGCCTGAGCTTGGGAAGCTTGAACATTTACAGTATCTgtatgccatc ... attgatgcagAGAGCTCTACAAAAACAACATCCAAGGAACTATACCTTCCGAACTTGGAAA
EST: TCTGGACATCTTGCGCCTGAGCTTGGGAAGCTTGAACATTTACAGTATCT AGAGCTCTACAAAAACAACATCCAAGGAACTATACCTTCCGAACTTGGAAAEST: gi|124988432|gb|EL060818.1|EL060818
genomic: TCTGGACATCTTGCGCCTGAGCTTGGGAAGCTTGAACATTTACAGTATCTgtatgccatc ... attgatgcagAGAGCTCTACAAAAACAACATCCAAGGAACTATACCTTCCGAACTTGGAAA
EST: ACATTTACAGTATCT AGAGCTCTACAAAAACAACATCCAAGGAACTATACCTTCCGAACTTGGAAAEST: gi|125245819|gb|EL259904.1|EL259904
genomic: ACATTTACAGTATCTgtatgccatc ... attgatgcagAGAGCTCTACAAAAACAACATCCAAGGAACTATACCTTCCGAACTTGGAAA
EST: TCTGGACATCTTGCGCCTGAGCTTGGGAAGCTTGAACATTTACAGTATCT AGAGCTCTAACAAAAAACAACATCCAAGGAACTATACCTTCCGAACTTGGEST: gi|125325224|gb|EL339304.1|EL339304
genomic: TCTGGACATCTTGCGCCTGAGCTTGGGAAGCTTGAACATTTACAGTATCTgtatgccatc ... attgatgcagAGAGCTCTA-CAAAAA-CAACATCCAAGGAACTATACCTTCCGAACTTGG
EST: GAAGCTTGAACATTTTACAGTATCT AGAGCTCTACAAAAACAACATCCAAGGAACTATACCTTCCGAACTTGGAAAEST: gi|116456643|gb|EG499235.1|EG499235
genomic: GAAGCTTGAACA-TTTACAGTATCTgtatgccatc ... attgatgcagAGAGCTCTACAAAAACAACATCCAAGGAACTATACCTTCCGAACTTGGAAA
EST: TCTGGACATCTTGCGCCCGAGCTTGGGAAGCTTGAACATTTACAGTATCT AGAGCTCTACAAAAACAACATCCAAGGAACTATACCTTCCGAACTTGGAAA
genomic: TCTGGACATCTTGCGCCTGAGCTTGGGAAGCTTGAACATTTACAGTATCTgtatgccatc ... attgatgcagAGAGCTCTACAAAAACAACATCCAAGGAACTATACCTTCCGAACTTGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATTTGGGAAATTCAAACCTCTCTGGACATCTTGCGCCTGAGCTTGGGAAGCTTGAACATTTACAGTATCTgtatgccatcactcttttgacttttacttatccgaaatttataatggaattaacattgtataccatataatgcacataaactgtttactttgagattggttatgttatagacaatgtaagactaactcttaacttgtcctatgattgatgcag
- - - - - - - - - - - - - - - - - - - - GAGCTT