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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAAGATCAAGATGTAGCGAAAGCCTTGATCGAATATATTAGCCAGAATTGTATTTCCACATTCATTCTAGGTGCCTCGTTGAAGAAGAGCATTACCAGgttcacaaaatagtatttctatatctttctctctgatgaaaccagtagtacctaataatcttgtctgaaaaattctccaatatggttttgatttgaag

Basic information

species Arabidopsis thaliana
transcript AT5G20310.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116480538|gb|EG523130.1|EG523130
EST:     TGTATTTCCACATTCATTCTAGGTGCCTCGTTGAAGAAGAGCATTACCAG                         GCTGTTCAAGGCTGATGACATTCCAAGTAATGTGATGAGATGGGCTCCAGA
genomic: TGTATTTCCACATTCATTCTAGGTGCCTCGTTGAAGAAGAGCATTACCAGgttcacaaaa ... tgatttgaagGCTGTTCAAGGCTGATGACATTCCAAGTAATGTGATGAGATGGGCTCCAGA
EST: gi|116480536|gb|EG523128.1|EG523128
EST:     TGTATTTCCACATTCATTCTAGGTGCCTCGTTGAAGAAGAGCATTACCAG                         GCTGTTCAAGACTGATGACATTCCAAGTAATGTGATGAGATGGGCTCCGGA
genomic: TGTATTTCCACATTCATTCTAGGTGCCTCGTTGAAGAAGAGCATTACCAGgttcacaaaa ... tgatttgaagGCTGTTCAAGGCTGATGACATTCCAAGTAATGTGATGAGATGGGCTCCAGA
EST: gi|116480535|gb|EG523127.1|EG523127
EST:     TGTATTTCCACATTCATTCTAGGTGCCTCGTTGAAGAAGAGCATTACCAG                         GCTGTTCAAGACTGATGACATTCCAAGTAATGTGATGAGATGGGCTCCGGA
genomic: TGTATTTCCACATTCATTCTAGGTGCCTCGTTGAAGAAGAGCATTACCAGgttcacaaaa ... tgatttgaagGCTGTTCAAGGCTGATGACATTCCAAGTAATGTGATGAGATGGGCTCCAGA
EST: gi|116480540|gb|EG523132.1|EG523132
EST:     TGTATTTCCACATTCATTCTAGGTGCCTCGTTGAAGAAGAGCATTACCAG                         GCTGTTCAAGGCTGATGACATTCCAAGTAATGTGATGAGATGGGCTCCAGA
genomic: TGTATTTCCACATTCATTCTAGGTGCCTCGTTGAAGAAGAGCATTACCAGgttcacaaaa ... tgatttgaagGCTGTTCAAGGCTGATGACATTCCAAGTAATGTGATGAGATGGGCTCCAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGAAGATCAAGATGTAGCGAAAGCCTTGATCGAATATATTAGCCAGAATTGTATTTCCACATTCATTCTAGGTGCCTCGTTGAAGAAGAGCATTACCAGgttcacaaaatagtatttctatatctttctctctgatgaaaccagtagtacctaataatcttgtctgaaaaattctccaatatggttttgatttgaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA