1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAAGCGTATCCGCTTGCAGATTCTCAGTTATCGATAACAATTCTTGACCTCGTTCAACAAGCTACTAACTACAAGCAGCTCAAGAAGGGTGCTAATGAAGgtatccgcttgttactcatgtgtgtttgtctctcttatttattgagtttaatgtttgtgaagttgttcctgatttatttaaatttgttcatttcag
species | Arabidopsis thaliana |
transcript | AT5G20160.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGTTCAACAAGCTACTAACTACAAGCAGCTCAAGAAGGGTGCTAATGAAG CTACGAAGACTCTTAATCGTGGAAEST: gi|164128302|gb|EL999517.1|EL999517
genomic: CGTTCAACAAGCTACTAACTACAAGCAGCTCAAGAAGGGTGCTAATGAAGgtatccgctt ... ttcatttcagCTACGAAGACTCTTAATCGTGGAA
EST: CGTTCAACAAGCTACTAACTACAAGCAGCTCAAGAAGGGTGCTAATGAAG CTACGAAGACTCTTAATCGTGGAATCTCCGAGTTTGTTGTCATGGEST: gi|86078880|gb|DR374637.1|DR374637
genomic: CGTTCAACAAGCTACTAACTACAAGCAGCTCAAGAAGGGTGCTAATGAAGgtatccgctt ... ttcatttcagCTACGAAGACTCTTAATCGTGGAATCTCCGAGTTTGTTGTCATGG
EST: CGTTCAACAAGCTACTAACTACAAGCAGCTCAAGAAGGGTGCTAATGAAG CTACGAAGACTCTTAATCGTGGAATCTCCGAGTTTGTTGTCATGGCTGCAG
genomic: CGTTCAACAAGCTACTAACTACAAGCAGCTCAAGAAGGGTGCTAATGAAGgtatccgctt ... ttcatttcagCTACGAAGACTCTTAATCGTGGAATCTCCGAGTTTGTTGTCATGGCTGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGCGTATCCGCTTGCAGATTCTCAGTTATCGATAACAATTCTTGACCTCGTTCAACAAGCTACTAACTACAAGCAGCTCAAGAAGGGTGCTAATGAAGgtatccgcttgttactcatgtgtgtttgtctctcttatttattgagtttaatgtttgtgaagttgttcctgatttatttaaatttgttcatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG