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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACGAATGCTCAGAGAAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATGTGGGTGAAGTGGTAAAAGTGATGGGAAAAAACAAGGTCTTGGTTAAGgtatgaatgtttttatcgtattatctagattggtttttgaattgtttgcaatcatatgaacattgatagaataatactttcccatgtttcag

Basic information

species Arabidopsis thaliana
transcript AT5G20000.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G20000.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 2
TACGAATGCTCAGAGAAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATGTGGGTGAAGTGGTAAAAGTGATGGGAAAAAACAAGGTCTTGGTTAAGgtatgaatgtttttatcgtattatctagattggtttttgaattgt-ttgcaatcatatgaacattgatagaataatactttcccatgtttcag--------
|  |||||||||| |||||| | ||| | |||||||||||||| || ||||| ||||| ||||| || || ||||| |||   |||||  | || ||||||  | | | |||||  | |||  |    |  | | |||    |  |  |    |   ||  ||  ||       |    |  ||   | |         
TTAGAATGCTCAGGGAAGAGCTGCAGTTGCTTCAAGAACCTGGCTCGTATGTTGGTGAGGTGGTGAAGGTCATGGGTAAATCAAAGGTTCTAGTGAAGgtac-attctctttattcttttacatgatcttttctatgatcaatactttaggtgtgccaattttattacttgtccatggacttattacttaattttgatt

upper sequence: AT5G20000.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv04s0008g04690.t01 (Vitis vinifera), 5'ss of exon 2
TACGAATGCTCAGAGAAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATGTGGGTGAAGTGGTAAAAGTGATGGGAAAAAACAAGGTCTTGGTTAAGgtatgaatgtttttatcgtattatctagattggtttttgaattgtttgcaatc--atatgaacattgat-------agaataatactttcccatgtttcag
|  | |||||||||||||| || ||||| |||||||| ||||| || ||||| |||||||| || ||||| |||||||||   ||||| ||||||||||||    |   || |    ||||  || ||   | |   | |   ||| | |   || || | |||  |       |||||  |  |||||| | ||    
TGAGGATGCTCAGAGAAGAATTGCAGCTGCTTCAAGAGCCTGGATCATATGTTGGTGAAGTAGTCAAAGTTATGGGAAAATCGAAGGTTTTGGTTAAGgtagtgttcagttaaaaaaattacttatatatatataaaagtaaattgtagtttaatttggaaattagtttgctcgagaatttttttttccctttttctt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164134587|gb|ES030839.1|ES030839
EST:     ATGTGGGTGAAGTGGTAAAAGTGATGGGAAAAAACAAGGTCTTGGTTAAG                         GTTCATCCAGAGGGGAAGTATGTT
genomic: ATGTGGGTGAAGTGGTAAAAGTGATGGGAAAAAACAAGGTCTTGGTTAAGgtatgaatgt ... catgtttcagGTTCATCCAGAGGGGAAGTATGTT