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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATAAAGTATGAAAGTGTGATTCATGAGTTTGATCCTTACTTCAATTATAGAGTCACTCAGgttcactctcttttcttatttccaggatgttaatcttagctttgggcgagttctccttttaatttctgagattgcggtcctatttaatttgttgtttatttcag

Basic information

species Arabidopsis thaliana
transcript AT5G19690.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 2
GTTATAAAGTATGAAAGTGTGATTCATGAGTTTGATCCTTACTTCAATTATAGAGTCACTCAGgttcactctcttt-------tcttatttccaggatgttaatcttagctttgggcgagtt-ctccttttaatttctgagattgcggtcctatttaatttgttgtttatttcag-------------------------------------------------------------------------
|||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||||||   | || |||           ||||      | |||  ||      |||  ||||| ||| |  |  ||  ||    | |      ||  ||||| ||  ||  |  |                                                                          
GTTATAAAGTATGAGAGTGTTATTCACGAGTTTGATCCTTATTTCAACTATAGAGTCACTCAGgtgagcactatttggaatggaaccattttgcacctatta--ctacatgatggaggagtttctcatgctggttaatggctatacaaaa--atggaatttcttcattgctgtaacatttgtttaattttactctgttaatctcaatgccataaaaattcacaaatgacgctactttgttggtttcag

upper sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA01G01270.1 (Glycine max), 5'ss of exon 2
GTTATAAAGTATGAAAGTGTGATTCATGAGTTTGATCCTTACTTCAATTATAGAGTCACTCAGgttcactctcttttc-------ttatttccaggatgttaatcttagctttgggcgagttctcct-tttaatttctgagattgcggtcctatttaatttgttgtttatttcag------------------------------------------------------------------------------------
|||||||||||||| ||||| || || |||||||||||||| ||||| ||||||||||| |||||   | || |||           ||||      | ||  |||||   |||||   ||       | |  | |    | |   ||   ||   || | | |  || |||||                                                                                     
GTTATAAAGTATGAGAGTGTTATCCACGAGTTTGATCCTTATTTCAACTATAGAGTCACCCAGgtgagcactatttggaatggaaccattttgcacctattggtcttactattgggatggtggaggagtctcttatgctggttaatggcaatagaaaaatggattcttttttcatggctgtaacatttgttcaattttactctgttaatctcaatgccataaaaattcacaaatgatgacacaactttgttggtttcag

upper sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv11s0016g03320.t01 (Vitis vinifera), 5'ss of exon 2
GTTATAAAGTATGAAAGTGTGATTCATGAGTTTGATCCTTACTTCAATTATAGAGTCACTCAGgttcactctcttttcttatttccaggatgttaatcttagctttgggcgagttctccttttaatttctgagattgcggtcctatttaatttgttgtttatttcag
|||||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||||||||||||    |   ||| ||| |||   |  | ||  | |||  | |    |  |    |  |    |  |  | ||| | |       |           |  | | 
GTTATAAAGTATGAGAGTGTTATTCACGAGTTCGATCCTTATTTCAATTATAGAGTCACTCAGgtgaggt---tttccttgtttgttgatttttttttttaaatctctttgtttatatcaatggcctgtttggtttgagattggtgggagaagaaaaaggaactga-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164150875|gb|EL967447.1|EL967447
EST:     AAGTGTGATTCATGAGTTTGATCCTTACTTCAATTATAGAGTCACTCAG                         TTCTTATCGAAGAATGGAATATACGAGTTCTGGAATTGGTTTG
genomic: AAGTGTGATTCATGAGTTTGATCCTTACTTCAATTATAGAGTCACTCAGgttcactctc ... tttatttcagTTCTTATCGAAGAATGGAATATACGAGTTCTGGAATTGGTTTG
EST: gi|86067003|gb|DR362760.1|DR362760
EST:     AAAGTGTGATTCATGAGTTTGATCCTTACTTCAATTATAGAGTCACTCAG                         TTCTTATCGAAGAATGGAATATACGAGTTCTGGAATTGGTTTGATGATCGG
genomic: AAAGTGTGATTCATGAGTTTGATCCTTACTTCAATTATAGAGTCACTCAGgttcactctc ... tttatttcagTTCTTATCGAAGAATGGAATATACGAGTTCTGGAATTGGTTTGATGATAGG
EST: gi|163987633|gb|EL974033.1|EL974033
EST:     AAAGTGTGATTCATGAGTTTGATCCTTACTTCAATTATAGAGTCACTCAG                         TTCTTATCGAAGAATGGAATATACGAGTTCTGGAATTGGTTTG
genomic: AAAGTGTGATTCATGAGTTTGATCCTTACTTCAATTATAGAGTCACTCAGgttcactctc ... tttatttcagTTCTTATCGAAGAATGGAATATACGAGTTCTGGAATTGGTTTG