1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAAACCCAGCGATGCCTTCCCCAATGCTAGCAAGTGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAGgttcgtccttttttcggaattttgtaataatcgattcagatttggatttgtatattgatcttccaggaattgacgagttttgatttgttgcag
species | Arabidopsis thaliana |
transcript | AT5G19510.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGAGTCCGTGGCTTCCCAACTTGCTAAAAG TTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGCTGCTGCEST: gi|164111523|gb|ES047318.1|ES047318
genomic: CGAGTCCGTGGCTTCCCAACTTGCTAAAAGgttcgtcctt ... tttgttgcagTTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGCTGCTGC
EST: CGAGTCCGTGGCTTCCCTACTTGCTAAAAG TTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGCEST: gi|125017112|gb|EL089381.1|EL089381
genomic: CGAGTCCGTGGCTTCCCAACTTGCTAAAAGgttcgtcctt ... tttgttgcagTTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGC
EST: CCCAATGCTAGCAAGTGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAG TTTCCCTGGAAAGGCCGTTGGEST: gi|124866812|gb|EH951249.1|EH951249
genomic: CCCAATGCTAGCAAGTGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAGgttcgtcctt ... tttgttgcagTTTCCCTGGAAAGGCCGTTGG
EST: TACGAGTCCGTGGCTTCCCAACTTGCTAAAAG TTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCCGCTGCTGCEST: gi|164136334|gb|ES010098.1|ES010098
genomic: TACGAGTCCGTGGCTTCCCAACTTGCTAAAAGgttcgtcctt ... tttgttgcagTTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGCTGCTGC
EST: CTTGCTAAAAG TTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGCTGCTGCEST: gi|164156949|gb|EL994142.1|EL994142
genomic: CTTGCTAAAAGgttcgtcctt ... tttgttgcagTTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGCTGCTGC
EST: CAAGTGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAG TTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGCTGCTGCEST: gi|125064602|gb|EL132168.1|EL132168
genomic: CAAGTGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAGgttcgtcctt ... tttgttgcagTTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGCTGCTGC
EST: CCCAATGCTAGCAAGTGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAG TTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGEST: gi|125233100|gb|EL247185.1|EL247185
genomic: CCCAATGCTAGCAAGTGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAGgttcgtcctt ... tttgttgcagTTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTG
EST: GTGGCTTCCCAACTTGCTAAAAG TTTACCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGCTGCTGEST: gi|152034690|gb|BP834827.2|BP834827
genomic: GTGGCTTCCCAACTTGCTAAAAGgttcgtcctt ... tttgttgcagTTT-CCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGCTGCTG
EST: CCCAATGCTAGCAAGTGGTACGAGTC-GTGGGTTCCCAACTTGCTAAAAG TT-CCCTGCAAAGGCCGTCGGAGTACAATTCGGTGGCTCTGCTGATGCTGCEST: gi|125061658|gb|EL130297.1|EL130297
genomic: CCCAATGCTAGCAAGTGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAGgttcgtcctt ... tttgttgcagTTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGCTGCTGC
EST: CCAATGCTAGCAAGTGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAAG TTTCACTGGAAAGGCCGTTGGAGTACAATTCGGTGGEST: gi|124974581|gb|EL048131.1|EL048131
genomic: CCAATGCTAGCAAGTGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAA-Ggttcgtcctt ... tttgttgcagTTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGG
EST: TACGAGTCCGTGGCTTCCCAACTTGCTAAAAG TTTCCCTGGAAAGGCCGTTGGAGTAACAATTCGGTGGCTCTGCTGCTGACTEST: gi|125195559|gb|EL210513.1|EL210513
genomic: TACGAGTCCGTGGCTTCCCAACTTGCTAAAAGgttcgtcctt ... tttgttgcagTTTCCCTGGAAAGGCCGTTGGAGTA-CAATTCGGTGGCTCTGCTGCTG-CT
EST: CTAGCAAGTGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAG TTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGCTGCTGCEST: gi|116450797|gb|EG493389.1|EG493389
genomic: CTAGCAAGTGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAGgttcgtcctt ... tttgttgcagTTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGCTGCTGC
EST: CCCAATGCTAGCAAGTGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAG TTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGCTGCTGCEST: gi|124982204|gb|EL055027.1|EL055027
genomic: CCCAATGCTAGCAAGTGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAGgttcgtcctt ... tttgttgcagTTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGCTGCTGC
EST: CCCAATGCTAGCAAGTGGTACGAGTC-GTGGCTTCCCAACTTGCTAAAAG TTTCCCTGGAAAGGCCGTTGGAGTAEST: gi|124803267|gb|EH891696.1|EH891696
genomic: CCCAATGCTAGCAAGTGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAGgttcgtcctt ... tttgttgcagTTTCCCTGGAAAGGCCGTTGGAGTA
EST: CCCAATGCTAGCAAGTGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAG TTTCCCTGGAAAGGCCGTTGGEST: gi|124946172|gb|EL022118.1|EL022118
genomic: CCCAATGCTAGCAAGTGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAGgttcgtcctt ... tttgttgcagTTTCCCTGGAAAGGCCGTTGG
EST: CCCAATGCTAGCAAGTGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAG TTTCCCTGGAAAGGCCGTTGGAGTACEST: gi|124759538|gb|EH849668.1|EH849668
genomic: CCCAATGCTAGCAAGTGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAGgttcgtcctt ... tttgttgcagTTTCCCTGGAAAGGCCGTTGGAGTAC
EST: AACTTGCTAAAAG TTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGCTGCTGC
genomic: AACTTGCTAAAAGgttcgtcctt ... tttgttgcagTTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGCTGCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAAACCCAGCGATGCCTTCCCCAATGCTAGCAAGTGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAGgttcgtccttttttcggaattttgtaataatcgattcagatttggatttgtatattgatcttccaggaattgacgagttttgatttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG