1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAGATTAGTTTACTGGCAAATCCAAATCAAGTTCATCCGACTAGGTTCTGGGGTGTTTATACAAAGCTTAAGATCTTTAACATGACTGATTATAAGAAAGgtaggagatttcagcagtttttttcgttggattccggtttgagaacttaaatctcaaaagctttgtctttttttttgtgtag
species | Arabidopsis thaliana |
transcript | AT5G18480.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGGTGTTTATACAAAGCTTAAGATCTTTAACATGACTGATTATAAGAAAG TTGTGTATCTTGATGCTGATACTATTGTGGTAAAGAACATTGAGGATCTGTEST: gi|125212040|gb|EL226994.1|EL226994
genomic: GGGTGTTTATACAAAGCTTAAGATCTTTAACATGACTGATTATAAGAAAGgtaggagatt ... ttttgtgtagTTGTGTATCTTGATGCTGATACTATTGTGGTAAAGAACATTGAGGATCTGT
EST: GGGTGTTTATACAAAGCTTAAGATCTTTAACATGACTGATTATAAGAAAG TTGTGTATCTTGATGCTGATACTA
genomic: GGGTGTTTATACAAAGCTTAAGATCTTTAACATGACTGATTATAAGAAAGgtaggagatt ... ttttgtgtagTTGTGTATCTTGATGCTGATACTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGATTAGTTTACTGGCAAATCCAAATCAAGTTCATCCGACTAGGTTCTGGGGTGTTTATACAAAGCTTAAGATCTTTAACATGACTGATTATAAGAAAGgtaggagatttcagcagtttttttcgttggattccggtttgagaacttaaatctcaaaagctttgtctttttttttgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA