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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACAAGATGTTGTTCTTCCTGGGAGTTTGAGTTTGTTGGGTGAAGCTTATGATCGATGCGGTGAAGTTTGCGCTGAATATGCTAAGACGTTTTATCTTGgtatggatctttttaactcttctttggctttggtgtaatgtagagtggtgttctgagttctaatgtttgtgttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G17230.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G17230.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G40720.1 (Glycine max), 5'ss of exon 2
CCACAAGATGTTGTTCTTCCTGGGAGTTTGAGTTTGTTGGGTGAAGCTTATGATCGATGCGGTGAAGTTTGCGCTGAATATGCTAAGACGTTTTATCTTGgtatggatctttttaactcttctttggctttggtgt--aatgtagagtg-gtgttctgagttctaatgtttgtgttgcag------------------------
   | |||| ||| ||| ||||||| |||||||||||||  |||||| ||||| || || || ||| |||| ||||||||||| || || ||||| || |||  |  |  | ||| |  | ||   ||   | | |  ||| | || |   | |  |  ||   |  ||||    | ||                         
AAGCCAGATATTGCTCTGCCTGGGAATTTGAGTTTGTTGAATGAAGCATATGACCGTTGTGGAGAAATTTGTGCTGAATATGCGAAAACATTTTACCTGGgttagctttctcttatccttcctcatgcgaggatatcaaattttgattacatttggtttgtggcatggttttgagtccaattaacatgggattctgtctttcag

upper sequence: AT5G17230.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv04s0079g00680.t01 (Vitis vinifera), 5'ss of exon 2
CCACAAGATGTTGTTCTTCCTGGGAGTTTGAGTTTGTTGGGTGAAGCTTATGATCGATGCGGTGAAGTTTGCGCTGAATATGCTAAGACGTTTTATCTTGgtatggatctttttaactcttctttggctttggtgtaatgtagagt----ggtgttctgagttctaatgtttgtgttgcag--------------------
  ||  ||| || |||||||||||| |  ||| |||||| ||||||| ||||||||||| ||||||||||| || || ||||| ||||| |||||  | |||  |  |    ||| || ||||||  |||||      | | |  |    |     | |||      ||      | |||                     
AAACCTGATATTATTCTTCCTGGGACTCAGAGCTTGTTGAGTGAAGCCTATGATCGATGTGGTGAAGTTTGTGCAGAGTATGCCAAGACATTTTACTTGGgttagccttcacttatctgttcttta-ctttgactctctttggtttctgagaaaaccagaggaaagttgagcagctagcataaagaatagcatgttctatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164107416|gb|EL968193.1|EL968193
EST:     TTTGCGCTGAATATGCTAAGACGTTTTATCTTG                         GAACTTTGCTTATGACACCCGAAAGGCGAA-GGCGATTTGGGCTATCTACG
genomic: TTTGCGCTGAATATGCTAAGACGTTTTATCTTGgtatggatct ... tgtgttgcagGAACTTTGCTTATGACACCCGAAAGGCGAAAGGCGATTTGGGCAATCTACG
EST: gi|116476475|gb|EG519067.1|EG519067
EST:     TGATCGATGCGGTGAAGTTTGCGCTGAATATGCTAAGACGTTTTATCTTG                         GAACTTTGCTTATGACACCCGAAAGGCGAAAGGCGATTTGGGCAATCTACG
genomic: TGATCGATGCGGTGAAGTTTGCGCTGAATATGCTAAGACGTTTTATCTTGgtatggatct ... tgtgttgcagGAACTTTGCTTATGACACCCGAAAGGCGAAAGGCGATTTGGGCAATCTACG
EST: gi|116476476|gb|EG519068.1|EG519068
EST:     TGATCGATGCGGTGAAGTTTGCGCTGAATATGCTAAGACGTTTTATCTTG                         GAACTTTGCTTATGACACCCGAAAGGCGAAAGGCGATTTGGGCAATCTACG
genomic: TGATCGATGCGGTGAAGTTTGCGCTGAATATGCTAAGACGTTTTATCTTGgtatggatct ... tgtgttgcagGAACTTTGCTTATGACACCCGAAAGGCGAAAGGCGATTTGGGCAATCTACG
EST: gi|125114579|gb|EL164941.1|EL164941
EST:     TGATCGATGCGGTGAAGTTTGCGCTGAATATGCTAAGACGTTTTATCTTG                         GTAACTTTGCTTATGACACCCGAAAGGCGAAAGGCGATTTGGGCAATCTAC
genomic: TGATCGATGCGGTGAAGTTTGCGCTGAATATGCTAAGACGTTTTATCTTGgtatggatct ... tgtgttgcagG-AACTTTGCTTATGACACCCGAAAGGCGAAAGGCGATTTGGGCAATCTAC