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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACGTCACGGAGAGCCAGATTGTGCTTATTATATAAGGACTGGACTTTGTAGGTTTGGTTCAACTTGCCGATTCAATCATCCTCACGACCGGAAACTGgtactgactctgtttctgtgtttgttctttcctctgtatcttgttgactcaaagtttgtagctttgagggtctgtgtgtgtgtgtgattacaagctgatgaatagtctcgtatccaatttctag

Basic information

species Arabidopsis thaliana
transcript AT5G16540.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G16540.3 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: LOC_Os12g21700.1 (Oryza sativa), 5'ss of exon 2
GGAACGTCACGGAGAGCCAGATTGTGCTTATTATATAAGGACTGGACTTTGTAGGTTTGGTTCAACTTGCCGATTCAATCATCCTCACGACCGGAAACTGgtactgactctgtttctgtgtttgttctttcctctgtatcttgttgactcaaagtttgtagctttgagggtctgtgtgtgtgtgtgattacaagctgatgaatagtctcgtatccaatttctag
 || ||    ||||||||||| ||   ||||||||| ||||||||||| |||||||||||    || |||  ||||||||| || |   |  | ||||||||| ||   ||  | |    | | || |||  | ||  |   ||    |  |   ||| | |||||     ||    || | | |  | ||   ||||   | | |                  
TGAGCGGATAGGAGAGCCAGACTGCAGTTATTATATGAGGACTGGACTATGTAGGTTTGGGATGACCTGCAAATTCAATCACCCCCCAAATAGAAAACTGgtaatgttacttgtgcatcatgtattatttgtt-tgggtaaagtctttttgatccttg-aactttg-----ctcaaagttttttttttcaccc-ctgaaatacaatac----------------