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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCAACAGTTGCAGCTACTGATGTTGGTTGGTACATTCTTGGTGAAAATCAGCAGAACCTGGGCCCTTATACTTTCTCTGAGCTATGTAgtaagtgttcatgttaacagattccttgttctagtaaggtttataagaaatacgagctattaagcgctgtactttacttgtttgctttgattgggcag

Basic information

species Arabidopsis thaliana
transcript AT5G16260.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G16260.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv00s0499g00010.t01 (Vitis vinifera), 5'ss of exon 2
-GGGCAACAGTTGCAGCTACTGATGTTGGTTGGTACATTCTTGGTGAAAATCAGCAGAACCTGGGCCCTTATACTTTCTCTGAGCTATGTAgtaagtg------ttcatgttaacagattcc--ttgttctagtaaggtttata-agaaatacgagctattaagcgctgtactttacttgtttgctttgattgggcag-------------------------------------------------------------------------------------
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GTGTGGATAATTG----TGATGAAGTGGGGTGGTATATTCTTGGTGAAAATCAACAGAATCTTGGCCCTTATGCGTTTTCAGAGTTGCGCGgtaagtgaatgtgtttatgtggacaattgaggattctcttgatggcattggcatactgatat-attcatttagtggtgttgtttttcggttccccccctatttgtggattctgtttcttgaatttcagttatactggtgaaaaattgcacgatgaattggtctacttagatttatttacttggcgtggacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876852|gb|AU237683.1|AU237683
EST:     TGGTGAAAATCAGCAGAACCTGGGCCCTTATACTTTCTCTGAGCTATGTA                         ACCATTTCAGGAATGGTTACCTACTAGAAACTACTCTAGTCTGGGCTGACG
genomic: TGGTGAAAATCAGCAGAACCTGGGCCCTTATACTTTCTCTGAGCTATGTAgtaagtgttc ... gattgggcagACCATTTCAGGAATGGTTACCTACTAGAAACTACTCTAGTCTGGGCTGACG