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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACTTTCTTGAGCGTCGTCTTCAGACTATTGTGTTCAAGTCTGGTATGGCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatctcttcgatttatttgtgcttgtgtatgaattatctttgttatatcaattgataggatctgaaatgaaattaacattttctctgtttccat...

Basic information

species Arabidopsis thaliana
transcript AT5G15200.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084155|gb|DR379914.1|DR379914
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGG
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGG
EST: gi|47829271|gb|CK118955.1|CK118955
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|164101054|gb|ES075751.1|ES075751
EST:     AGTCTATCCATCACTCTCGTGTCCTCGTCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGAC
genomic: AGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGAC
EST: gi|125050074|gb|EL122343.1|EL122343
EST:     CTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATTATTCATGGTGAGA
genomic: CTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGA
EST: gi|116429841|gb|EG472433.1|EG472433
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|116429829|gb|EG472421.1|EG472421
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|125158560|gb|EL187099.1|EL187099
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCA
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCA
EST: gi|125084983|gb|EL145002.1|EL145002
EST:     CATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCA
genomic: CATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCA
EST: gi|47829254|gb|CK118938.1|CK118938
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|47828355|gb|CK118039.1|CK118039
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|124989994|gb|EL062263.1|EL062263
EST:     ATCACTCTCGTGTCCTCATCAGGTCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATT
genomic: ATCACTCTCGTGTCCTCATCAGG-CAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATT
EST: gi|47829833|gb|CK119517.1|CK119517
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|86080682|gb|DR376439.1|DR376439
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|47829201|gb|CK118885.1|CK118885
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|164157406|gb|ES048318.1|ES048318
EST:     CTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCA
genomic: CTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGC-AGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCA
EST: gi|47831875|gb|CK121559.1|CK121559
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|47831357|gb|CK121041.1|CK121041
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|47829891|gb|CK119575.1|CK119575
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|47830533|gb|CK120217.1|CK120217
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|47830231|gb|CK119915.1|CK119915
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAAAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|116485008|gb|EG527600.1|EG527600
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|47831954|gb|CK121638.1|CK121638
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|164202945|gb|ES188868.1|ES188868
EST:     GTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGAC
genomic: GTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGAC
EST: gi|47829426|gb|CK119110.1|CK119110
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|164039422|gb|ES070734.1|ES070734
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACA
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACA
EST: gi|164070142|gb|ES170064.1|ES170064
EST:     CCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGAC
genomic: CCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGAC
EST: gi|163982077|gb|ES156747.1|ES156747
EST:     TCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: TCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|47827856|gb|CK117540.1|CK117540
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|47828732|gb|CK118416.1|CK118416
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGAT
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGAT
EST: gi|163982183|gb|ES163657.1|ES163657
EST:     CAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: CAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|19875599|gb|AU236430.1|AU236430
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGNGAACATTTCCATCATTCATGGTGAGACTTGATT
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATT-CCATCATTCATGGTGAGACTTGATT
EST: gi|47829330|gb|CK119014.1|CK119014
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|164126782|gb|ES164827.1|ES164827
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGT
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGT
EST: gi|124904174|gb|EH978254.1|EH978254
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCA
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCA
EST: gi|124913628|gb|EH987502.1|EH987502
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATT
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATT
EST: gi|47831790|gb|CK121474.1|CK121474
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|47831801|gb|CK121485.1|CK121485
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|47829582|gb|CK119266.1|CK119266
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|86081799|gb|DR377558.1|DR377558
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|164047159|gb|ES139842.1|ES139842
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAA
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAA
EST: gi|125077037|gb|EL139972.1|EL139972
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATT
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATT
EST: gi|164109458|gb|ES098490.1|ES098490
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCA
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCA
EST: gi|116391145|gb|EG433737.1|EG433737
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
EST: gi|47832184|gb|CK121868.1|CK121868
EST:     GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAG                         GGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC
genomic: GCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatc ... gttgttgtagGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAACTTTCTTGAGCGTCGTCTTCAGACTATTGTGTTCAAGTCTGGTATGGCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGgtattgcatctcttcgatttatttgtgcttgtgtatgaattatctttgttatatcaattgataggatctgaaatgaaattaacattttctctgtttccat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttctct