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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTCCGACCATGCCGTATTTCCGACCAAACTCCGGAGTCGAAGCTCGGTCTTCGCCACCAATAACGTATCTGCATCTACACCAGTGTGATCAATTCTCGgtaaattccactacaaacactctctcacttgtattgttctctttcttgtggtataagtaatcatggttagggttttatcgcag

Basic information

species Arabidopsis thaliana
transcript AT5G15120.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116467253|gb|EG509845.1|EG509845
EST:     CTTCGCCACCAATAACGTATCTGCATCTACACCAGTGTGATCAATTCTCG                         ATTGGGATTTTCTGTTTGCCACCTTCTGGTGTTATTCCTCTTCATAACCAT
genomic: CTTCGCCACCAATAACGTATCTGCATCTACACCAGTGTGATCAATTCTCGgtaaattcca ... tttatcgcagATTGGGATTTTCTGTTTGCCACCTTCTGGTGTTATTCCTCTTCATAACCAT
EST: gi|116471642|gb|EG514234.1|EG514234
EST:     CTTCGCCACCAATAACGTATCTGCATCTACACCAGTGTGATCAATTCTCG                         ATTGGGATTTTCTGTTTGCCACCTTCTGGTGTTATTCCTCTTCATAACCAT
genomic: CTTCGCCACCAATAACGTATCTGCATCTACACCAGTGTGATCAATTCTCGgtaaattcca ... tttatcgcagATTGGGATTTTCTGTTTGCCACCTTCTGGTGTTATTCCTCTTCATAACCAT