1 5' 3' | 2 5' 3' | 3 5' 3' |
CTTGATAAACCTGAGGTTGAAGATGATGATGACAATGATGAGGATGATTCCGAGGACGATGACGAGGCGGAGGgtaagtttttttttgtttttgcctctttcaattctcttcaattatatcttgtccgcattctataagttcatttgccaaaatgctacatgtttcaaatttt...
species | Arabidopsis thaliana |
transcript | AT5G13850.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GATGACAATGATGAGGATGATTCCGAGGACGATGACGAGGCGGAGG GACATGATGGGGAGGCCGGTGGCCGGTEST: gi|164031524|gb|ES005105.1|ES005105
genomic: GATGACAATGATGAGGATGATTCCGAGGACGATGACGAGGCGGAGGgtaagttttt ... gtttaaccagGACATGATGGGGAGGCCGGTGGCCGGT
EST: GATGAGGATGATTCCGAGGACGATGACGAGGCGGAGG GACATGATGGGGAGGCCGGTGGCCGGTCAAAGCAAAEST: gi|124862242|gb|EH946679.1|EH946679
genomic: GATGAGGATGATTCCGAGGACGATGACGAGGCGGAGGgtaagttttt ... gtttaaccagGACATGATGGGGAGGCCGGTGGCCGGTCAAAGCAAA
EST: ATGATGACAATGATGAGGATGATTCCGAGGACGATGACGAGGCGGAGG GACATGATGGGGAGGCCGGTGGCCGGTCAAAGCAAAGCAGAAGTG
genomic: ATGATGACAATGATGAGGATGATTCCGAGGACGATGACGAGGCGGAGGgtaagttttt ... gtttaaccagGACATGATGGGGAGGCCGGTGGCCGGTCAAAGCAAAGCAGAAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGATAAACCTGAGGTTGAAGATGATGATGACAATGATGAGGATGATTCCGAGGACGATGACGAGGCGGAGGgtaagtttttttttgtttttgcctctttcaattctcttcaattatatcttgtccgcattctataagttcatttgccaaaatgctacatgtttcaaatttt
- - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctctttc