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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTGGCTTCACCCGTATTTTGCATTCCGGTAATTCTGATAACTTGATGGATGAAATACCCACATTTGTGGTTGATCCTCTTCCTCCAGGTCTTGATCGGgtaagaatttttattttattcccgtttctccatttggtctcactttttgttgatggtttatcactgattcactcttttttgtaatcttgtaatcttgtatttag

Basic information

species Arabidopsis thaliana
transcript AT5G13500.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G13500.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA13G26610.1 (Glycine max), 5'ss of exon 2
GGGTGGCTTCACCCGTATTTTGCATTCCGGTAATTCTGATAACTTGATGGATGAAATACCCACATTTGTGGTTGATCCTCTTCCTCCAGGTCTTGATCGGgtaagaatttttattttattcccgtttctccatttggtctcactttttgttgatggttta--tcactgattcactcttttttgtaatcttgtaatcttgtatttag
||| || |||||  | ||| | ||||| || ||| |||| ||||||||||||||||| || ||  ||||||||||||| |||||  ||||| | |||||||| ||   |||  |   | |     || |   |||  |     | |||| | ||   |||  |   | |  |  |    ||| || | || |||| ||    ||  
GGGAGGATTCACGAGGATTCTACATTCTGGAAATCCTGACAACTTGATGGATGAAATTCCTACTGTTGTGGTTGATCCCCTTCCAGCAGGTTTGGATCGGgtgag---tttactgcaacttttcattatatttttttttatgttgtttgctaattccttatgtttttcagccgattggatttatagt-ttataatgtttctgtt--

upper sequence: AT5G13500.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA15G37490.2 (Glycine max), 5'ss of exon 2
GGGTGGCTTCACCCGTATTTTGCATTCCGGTAATTCTGATAACTTGATGGATGAAATACCCACATTTGTGGTTGATCCTCTTCCTCCAGGTCTTGATCGGgtaaga--atttttattttattcccgtttctccatttggt-ctcactttttgttgatggtttatcactgattcactcttttttgtaatcttgtaatcttgtatttag
||| || |||||| | ||| ||||||| || ||| |||| ||||||||| ||||||| || ||  ||||||||||||| |||||  ||||| | || ||||| ||   | |   | ||||       || |  || || |  |  ||  ||    ||  | |   |||||||  ||     ||||| | || |||| || |  ||  
GGGAGGATTCACCAGGATTCTGCATTCTGGAAATCCTGACAACTTGATGAATGAAATTCCTACTGTTGTGGTTGATCCCCTTCCAGCAGGTTTGGACCGGgtgagtttactgcaactttacattgtattttttatatgttgtttgctaattccctattttattcaactgattggct-----ttgtagt-ttataatatttttgttg-

upper sequence: AT5G13500.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv13s0084g00830.t01 (Vitis vinifera), 5'ss of exon 1
GGGTGGCTTCACCCGTATTTTGCATTCCGGTAATTCTGATAACTTGATGGATGAAATACCCACATTTGTGGTTGATCCTCTTCCTCCAGGTCTTGATCGGgtaagaatttttattttattcccgtttctccatttggtctcactttttgttgatggtttatcactgattcactcttttttgtaatcttgtaatcttgtatttag
||| || || ||  | ||| ||||||| || | | |||||||| ||||||| || || || || ||||||||||||||||||||| ||||| | |||||||| |||| | || || | ||    |   ||  |||| |     | ||  ||| ||  | |   |    |      || ||| ||  ||| || |  |  |  | 
GGGAGGATTTACAAGGATTCTGCATTCAGGAAGTCCTGATAACCTGATGGAAGAGATTCCTACTTTTGTGGTTGATCCTCTTCCTGCAGGTTTGGATCGGgtgagaaatcttcttctgttattatacatc--tttgcttcttatattctttgttgtataacggcattcttttaggttgttggaaaattgcaagcaagc-tcca-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116472502|gb|EG515094.1|EG515094
EST:     ATGAAATACCCACATTTGTGGTTGATCCTCTTCCTCCAGGTCTTGATCGG                         GGGTATGTTGTCTTGAATAGACCATGGGCATTCGTGCAATGGCTTGAAAGA
genomic: ATGAAATACCCACATTTGTGGTTGATCCTCTTCCTCCAGGTCTTGATCGGgtaagaattt ... ttgtatttagGGGTATGTTGTCTTGAATAGACCATGGGCATTCGTGCAATGGCTTGAAAGA