Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGGTCAGAGTCCTTGGTATGATAATCTTTGCCGTCCAGTCACAGATCTTCTCCCGTTGATTGCTCGTGGTGTTAGAGGTGTTACTAGCAACCCTGCGgtaattttatcatctctctttgtgtgtttggttttgcttttgctctgtgtttgttcatttgtctttacttcttcactttttatacatttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G13420.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G13420.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G47790.3 (Glycine max), 5'ss of exon 2
GGAAGGTCAGAGTCCTTGGTATGATAATCTTTGCCGTCCAGTCACAGATCTTCTCCCGTTGATTGCTCGTGGTGTTAGAGGTGTTACTAGCAACCCTGCGgtaattttatcatctctctttgtgtgtttggttttgcttttgc-----tctgtgtttgttcatttgtctttacttcttcactttttatacatttgcag------------------------------------------------------------------------
 ||||| |||||||| |||||||||||||| ||| | || || ||||| ||||| ||  | || ||  ||||||| ||||| || ||||||||||||||||||||  | |  |   | | | || || | |||   | | ||      |   |  |  | ||    ||   ||   || |  ||| | ||| ||                                                                            
AGAAGGGCAGAGTCCATGGTATGATAATCTCTGCAGACCTGTTACAGACCTTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGgtaataatttttttcttttctttgggtgttgttccccatgtgtagatattgctaataatgcagaaatcaaaaccgattaatgtttcaaacacttattctgagttataacatcttgctttaaaattgcttgttatagtattctaaactgctgtctgtatatgtgattgcag

upper sequence: AT5G13420.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv01s0150g00190.t01 (Vitis vinifera), 5'ss of exon 2
GGAAGGTCAGAGTCCTTGGTATGATAATCTTTGCCGTCCAGTCACAGATCTTCTCCCGTTGATTGCTCGTGGTGTTAGAGGTGTTACTAGCAACCCTGCGgtaattttatcatctctctttgtgtgtttggttttgcttttgctctgtgtttgttcatttgtctt-tacttcttcactttttatacatttgcag-------
|| ||| ||||| || ||||||||||| || ||| | || || || ||||| || ||  |||||||  ||||||| |||||||| ||||||||||| |||||||||  | |||  || |||   | ||   ||| | | || | ||||         | ||     || |||||    |  || | |              
GGGAGGGCAGAGCCCATGGTATGATAACCTCTGCAGGCCTGTTACCGATCTCCTTCCACTGATTGCAAGTGGTGTCAGAGGTGTAACTAGCAACCCAGCGgtaattaca-cataccttttttcttattctctttggttcttcccctgttccaacaggtgtggaggatatttcttttgatagtagaaaggaaagagggggaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125324207|gb|EL338287.1|EL338287
EST:     AGGTGTTACTAGCAACCCTGCG                         ATCTTCCAAAAAGCCATTTCCACTTCAAATGCTTATAATGATCAATTCAG
genomic: AGGTGTTACTAGCAACCCTGCGgtaattttat ... acatttgcagATCTTCCAAAAAGCCATTTCCACTTCAAATGCTTATAATGATCAATTCAG
EST: gi|116415992|gb|EG458584.1|EG458584
EST:     TTCTCCCGTTGATTGCTCGTGGTGTTAGAGGTGTTACTAGCAACCCTGCG                         ATCTTCCAAAAAGCCATTTCCACTTCAAATGCTTATAATGATCAATTCAG
genomic: TTCTCCCGTTGATTGCTCGTGGTGTTAGAGGTGTTACTAGCAACCCTGCGgtaattttat ... acatttgcagATCTTCCAAAAAGCCATTTCCACTTCAAATGCTTATAATGATCAATTCAG
EST: gi|164117505|gb|ES087994.1|ES087994
EST:     TTCTCCCGTTGATTGCTCGTGGTGTTAGAGGTGTTACTAGCAACCCTGCG                         ATCTTCCAAAA-GCCATTTCCACTTCAAATGCTTATAATGATCAA
genomic: TTCTCCCGTTGATTGCTCGTGGTGTTAGAGGTGTTACTAGCAACCCTGCGgtaattttat ... acatttgcagATCTTCCAAAAAGCCATTTCCACTTCAAATGCTTATAATGATCAA
EST: gi|125089797|gb|EL148031.1|EL148031
EST:     TTCTCCCGTTGATTGCTCGTGGTGTTAGAGGTGTTACTAGCAACCCTGCG                         ATCTTCCAAAAAGCCATTTCCACTTCAAATGCTTATAATGATCAATTC
genomic: TTCTCCCGTTGATTGCTCGTGGTGTTAGAGGTGTTACTAGCAACCCTGCGgtaattttat ... acatttgcagATCTTCCAAAAAGCCATTTCCACTTCAAATGCTTATAATGATCAATTC