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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGAGGTTTTGAAAAGAAAGTATGGACCAGAGGCAGATATTTGGAGTATTGGTGTCATGTTGTATATCCTCTTATGTGGTGTCCCGCCATTCTGGGCTGgtaaagatattccacagttttttctttatgtgtaccaaaagaataaacatatctagagatttttctatatatattcatgtcttgtgtaaattacctgatcacag

Basic information

species Arabidopsis thaliana
transcript AT5G12180.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G12180.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA14G04010.1 (Glycine max), 5'ss of exon 2
CCTGAGGTTTTGAAAAGAAAGTATGGACCAGAGGCAGATATTTGGAGTATTGGTGTCATGTTGTATATCCTCTTATGTGGTGTCCCGCCATTCTGGGCTGgtaaagata---ttccacagttttttctttatgtgt--accaaaagaataaacatatctagagatttttctatatatattcatgtcttgtgtaaattacctgatcacag----------
|||||||| ||||||||||| || || ||||| |  |||||||||||||||||||||||||| || || ||  |||| |||||||| ||||| ||||| |||    ||    || | || | ||     ||  | |  |  || | |||| |  | |    | |||  |   ||||| | ||    |||        |||  | || |           
CCTGAGGTCTTGAAAAGAAAATACGGGCCAGAAGTTGATATTTGGAGTATTGGTGTCATGTTATACATTCTTCTATGCGGTGTCCCTCCATTTTGGGCAGgtttgtattcatttactcaatcttaaagctacttcttaattaacaaaatagaattcttcttaaattgatg-gtatatctgcacaatttgaaactgaaaccaaaacatatggtttgacag

upper sequence: AT5G12180.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv06s0009g03150.t01 (Vitis vinifera), 5'ss of exon 2
CCTGAGGTTTTGAAAAGAAAGTATGGACCAGAGGCAGATATTTGGAGTATTGGTGTCATGTTGTATATCCTCTTATGTGGTGTCCCGCCATTCTGGGCTGgtaaagat--attccacagtttttt-ctttatgtgtaccaaaagaataaacatatctagagatttttctatatatattcatgtcttgtgtaaattacctga---tcacag-------------------
||||| || ||||| ||||  |||||||||||||  ||||| |||||| |||| || ||||||||||||||  ||||||| || || || |||||||| ||| |  ||  | ||  |  | || | || | |   |  |||       ||    || | | |  | | |  | |||   | |   | | |||| |   | |   |||||                    
CCTGAAGTATTGAAGAGAAGATATGGACCAGAGGTCGATATATGGAGTGTTGGGGTTATGTTGTATATCCTTCTATGTGGAGTTCCTCCCTTCTGGGCAGgtgattatcaagtcttctttgttatgctctttaattttcaaccactccaattactccacacacatgtatgcagatagagaagaaatatttaaaatgatttaaactcacaaagagaaattggattaacag