1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGAAGAGGAAGATAGATTTGGTTTATGGAGGAGGAAGTGTTGGATTGATGGGTTTGATATCCAGGAGAGTCTATGAAGGTGGTTTACATGTACTTGGgttagtttaagaatcctcaattagttttatagctctttcaatctcttttattttcaaacttagagtgattggattctctgtgattgcag
species | Arabidopsis thaliana |
transcript | AT5G11950.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGGGTTTGATATCCAGGAGAGTCTATGAAGGTGGTTTACATGTACTTGG AATCATTCCCAAAGCTTTGATGCCAAEST: gi|125211916|gb|EL226870.1|EL226870
genomic: ATGGGTTTGATATCCAGGAGAGTCTATGAAGGTGGTTTACATGTACTTGGgttagtttaa ... gtgattgcagAATCATTCCCAAAGCTTTGATGCCAA
EST: AGAGTCTATGAAGGTGGTTTACATGTACTTGG AATCATTCCCAAAGCTTTGATGCCAATTGAGEST: gi|19874754|gb|AU235585.1|AU235585
genomic: AGAGTCTATGAAGGTGGTTTACATGTACTTGGgttagtttaa ... gtgattgcagAATCATTCCCAAAGCTTTGATGCCAATTGAG
EST: ATGGGTTTGATATCCAGGAGAGTCTATGAAGGTGGTTTACATGTACTTGG AATCATTCCCAAAGCTTTGATGCCAATTGAG
genomic: ATGGGTTTGATATCCAGGAGAGTCTATGAAGGTGGTTTACATGTACTTGGgttagtttaa ... gtgattgcagAATCATTCCCAAAGCTTTGATGCCAATTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAAGAGGAAGATAGATTTGGTTTATGGAGGAGGAAGTGTTGGATTGATGGGTTTGATATCCAGGAGAGTCTATGAAGGTGGTTTACATGTACTTGGgttagtttaagaatcctcaattagttttatagctctttcaatctcttttattttcaaacttagagtgattggattctctgtgattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA