1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTGACAGTTGCATACAACAAAGATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAGgtaatgttacaatgaagatgtgtctctgttctttgatttattatttttgttgttgcaactgaaaaggattggttgtttattgatgggttacag
species | Arabidopsis thaliana |
transcript | AT5G11520.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAG GAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTEST: gi|301502006|gb|HO207546.1|HO207546
genomic: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAGgtaatgttac ... tgggttacagGAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTT
EST: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAG GAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTEST: gi|86054405|gb|DR350162.1|DR350162
genomic: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAGgtaatgttac ... tgggttacagGAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTT
EST: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAG GAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTEST: gi|301501550|gb|HO207090.1|HO207090
genomic: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAGgtaatgttac ... tgggttacagGAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTT
EST: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAG GAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTEST: gi|86054401|gb|DR350158.1|DR350158
genomic: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAGgtaatgttac ... tgggttacagGAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTT
EST: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAG GAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTEST: gi|86054406|gb|DR350163.1|DR350163
genomic: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAGgtaatgttac ... tgggttacagGAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTT
EST: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAG GAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTEST: gi|86054403|gb|DR350160.1|DR350160
genomic: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAGgtaatgttac ... tgggttacagGAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTT
EST: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAG GAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTEST: gi|301501070|gb|HO206610.1|HO206610
genomic: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAGgtaatgttac ... tgggttacagGAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTT
EST: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAG GAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTEST: gi|86054404|gb|DR350161.1|DR350161
genomic: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAGgtaatgttac ... tgggttacagGAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTT
EST: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAG GAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTEST: gi|86054407|gb|DR350164.1|DR350164
genomic: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAGgtaatgttac ... tgggttacagGAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTT
EST: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAG GAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTEST: gi|124990980|gb|EL063249.1|EL063249
genomic: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAGgtaatgttac ... tgggttacagGAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTT
EST: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAG GAGGGAAAACCTTTGGTTCTTAATGTTGEST: gi|86054402|gb|DR350159.1|DR350159
genomic: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAGgtaatgttac ... tgggttacagGAGGGAAAACCTTTGGTTCTTAATGTTG
EST: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAG GAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTEST: gi|116468511|gb|EG511103.1|EG511103
genomic: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAGgtaatgttac ... tgggttacagGAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTT
EST: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAG GAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTTEST: gi|125001819|gb|EL074088.1|EL074088
genomic: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAGgtaatgttac ... tgggttacagGAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTT
EST: CTTACCGAACTGAG GAGGGAAAACCTTTGGTTCTTTAATGT-GTGAGGAAAGCTGAGCAGCAGCTEST: gi|86054408|gb|DR350165.1|DR350165
genomic: CTTACCGAACTGAGgtaatgttac ... tgggttacagGAGGGAAAACCTTTGGTTCTT-AATGTTGTGAGGAAAGCTGAGCAGCAGCT
EST: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAG GAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTT
genomic: ATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAGgtaatgttac ... tgggttacagGAGGGAAAACCTTTGGTTCTTAATGTTGTGAGGAAAGCTGAGCAGCAGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGACAGTTGCATACAACAAAGATCCTAGCCCAGTTAAGCTGAATTTAGGAGTTGGTGCTTACCGAACTGAGgtaatgttacaatgaagatgtgtctctgttctttgatttattatttttgttgttgcaactgaaaaggattggttgtttattgatgggttacag
- - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - AGCTGA