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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGTCAGCACCGGTCCAAGAGCTTACTCAGAATCTTAAGAGAGCTGAAGGTTTCTTGCATTTCATACTTCAGAATGCACCTATTGTTATGGGCCATCAGgtaaagtaaaaggtgattcttgatcttgttttcgatcttttcgacttttctgattctttgttacttatgagtttcag

Basic information

species Arabidopsis thaliana
transcript AT5G10720.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10720.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA04G06190.1 (Glycine max), 5'ss of exon 1
TCAGTCAGCACCGGTCCAAGAGCTTACTCAGAATCTTAAGAGAGCTGAAGGTTTCTTGCATTTCATACTTCAGAATGCACCTATTGTTATGGGCCATCAGgtaaagtaaaaggtgattcttgatcttgttttcga----tcttttcgacttttctgattctttgttacttatgagtttcag------------------------------------------------------------------------------------------
 |||||  |||| ||  |||| ||  | ||||  || ||||| || ||   |||||||||||| ||||| || ||||||||||||||||| |||||||||||| |  |    ||   |   | | || || | ||    ||||  |   || | ||| |     ||  |  |||| ||  |                                                                                          
GCAGTCCTCACCTGTGGAAGAACTCTCCCAGATACTGAAGAGGGCAGATAATTTCTTGCATTTTATACTCCAAAATGCACCTATTGTTATTGGCCATCAGgtatatcactgagtatattgagtttttcttgtagaataatcttagcatattatatgacttgaaattgatagtgagattttgagtactcttttgacttttgagtagtaacaagcatgtagttactgcttgccatagtgagctcttttaatctgcttgatatttttcttccag

upper sequence: AT5G10720.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G06180.1 (Glycine max), 5'ss of exon 1
TCAGTCAGCACCGGTCCAAGAGCTTACTCAGAATCTTAAGAGAGCTGAAGGTTTCTTGCATTTCATACTTCAGAATGCACCTATTGTTATGGGCCATCAGgtaaagtaaaaggtgattcttgatcttgtttt------cgatcttttcgacttttct--gattctttgttacttatgagtttcag----------------------------------------------------------------------------------------
 |||||  | || ||  |||| ||  | ||||  || |||||||| ||   |||||||||||| ||||| || ||||||||| ||||||| |||||||||||| |  |    | |  | ||||  || | ||        |||||  |   |||| |  || |     ||  ||| ||| ||  |                                                                                        
GCAGTCCTCTCCTGTGGAAGAACTCTCCCAGATCCTGAAGAGAGCAGATAATTTCTTGCATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGgtatatgattgcgagtatattgagtttttcttatggaataatcttagcatattttatacgacttgaatttgattaagagattttgagtgctcttttgagtagagtaacaagcatgaagttactgcttgccatactgagggctcttttaatccgcttgatattttttcttccag

upper sequence: AT5G10720.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA17G33670.1 (Glycine max), 5'ss of exon 1
TCAGTCAGCACCGGTCCAAGAGCTTACTCAGAATCTTAAGAGAGCTGAAGGTTTCTTGCATTTCATACTTCAGAATGCACCTATTGTTATGGGCCATCAGgtaaagtaaaaggtgattcttgatcttgttttc------gatcttttcgacttttctgattctttgttacttatga---gtttcag------------------
 |||||  |||| ||  |||| ||  |||||| ||| |||||||| ||   |||||| ||||| || || || ||||||||| ||||||| |||||||||||| | || |  |||| | ||||  || |||        |   |  | |||   |||  |||  | ||   ||| |   || | ||                  
GCAGTCTTCACCTGTGGAAGAACTATCTCAGATTCTGAAGAGAGCAGATAATTTCTTACATTTTATTCTCCAAAATGCACCTGTTGTTATTGGCCATCAGgtacattaca--gtgagtattgagtttatttatctgaaagtaatcatagacaaatct--ttccatattgtgtataatttgtcttagattagcttttccttagtc

upper sequence: AT5G10720.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA14G12330.1 (Glycine max), 5'ss of exon 1
TCAGTCAGCACCGGTCCAAGAGCTTACTCAGAATCTTAAGAGAGCTGAAGGTTTCTTGCATTTCATACTTCAGAATGCACCTATTGTTATGGGCCATCAGgtaaagtaaaaggtgattcttgatcttgttt-------tcgatcttttcga---cttttctgattctttgttacttat--gagtttcag-------------
 |||||  |||| ||  |||| ||  |||||| ||| |||||||| ||   |||||| ||||| || || || ||||||||| ||||||| |||||||||||| | || |  |||| | ||||  || | |          ||| |    |   |||| |  ||| | ||  | ||||   || ||                
GCAGTCTTCACCTGTGGAAGAACTATCTCAGATTCTGAAGAGAGCAGATAATTTCTTACATTTTATTCTCCAAAATGCACCTGTTGTTATTGGCCATCAGgtacattaca--gtgagtattgagtttatctattgaaagtaatcatagaaaaatctttccatattgtgtgcaatttatcttagattagcttttcctcagtct

upper sequence: AT5G10720.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv04s0069g00750.t01 (Vitis vinifera), 5'ss of exon 3
TCAGTCAGCACCGGTCCAAGAGCTTACTCAGAATCTTAAGAGAGCTGAAGGTTTCTTGCATTTCATACTTCAGAATGCACCTATTGTTATGGGCCATCAGgtaa---agtaaaaggtgattcttgatcttgttttcgatcttttcg-acttttctgat----tctttgttacttatgagtttcag---------------
 |||||| | || ||  | || ||  | |||| ||| || ||||| ||   |||||| |||||| | || |||||||||||| ||||||| |||||||||||||   | |  |  |  | | |  ||||| | ||  |  | || | | |  | | ||    | | | |   |||||   ||  |               
GCAGTCATCCCCAGTGGAGGAACTGTCCCAGATTCTGAAAAGAGCAGATAATTTCTTACATTTCGTTCTACAGAATGCACCTGTTGTTATTGGCCATCAGgtaacccattccagagataatatgaatcttttgttgcacttctttgcaataatgtaatgttgtttctttggtttatggcatttgggttgttgagattgaa