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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGATGGACGAACTACTTGAGACCAGACATCAAGAGAGGGAGATTCTCTCCGGACGAGGAACAGACTATCTTGAATCTTCATTCAGTTCTTGGAAACAAgtaattaatcttgtgatgattgttttgatgttttagtcaacggttttgtttgtgtaccagattatcttatactgattgcttatgaatgatgatgttataag

Basic information

species Arabidopsis thaliana
transcript AT5G10280.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10280.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os02g51799.1 (Oryza sativa), 5'ss of exon 2
TAAGATGGACGAACTACTTGAGACCAGACATCAAGAGAGGGAGATTCTCTCCGGACGAGGAACAGACTATCTTGAATCTTCATTCAGTTCTTGGAAACAAgtaattaatcttgtgatgattgttttgatgttttagtcaacggttttgtttgtgtaccagattatcttatactgattgcttatgaatgatgatgttataag
||||||||||||||||| |||| ||||||||||||||||| |  ||| |  | | |||| |  | || ||| |  | |||||  | |||||||| ||||||||  || |   |||         |     |   |  ||  |  |   | ||  |  |       | |  |||| || | |||        |      | |
TAAGATGGACGAACTACCTGAGGCCAGACATCAAGAGAGGAAAGTTCACCTCTGCCGAGAAGGATACCATCCTCCAGCTTCACGCCGTTCTTGGCAACAAgtacgtactgcagtgcactgcacctcctcatcaaatccatagcataaatatgcttttcttgcatccatcaactggtt-catatttgcatctaatcctcagg

upper sequence: AT5G10280.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os06g11780.1 (Oryza sativa), 5'ss of exon 2
TAAGATGGACGAACTACTTGAGACCAGACATCAAGAGAGGGAGATTCTCTCCGGACGAGGAACAGACTATCTTGAATCTTCATTCAGTTCTTGGAAACAAgtaatt----aatcttgtgatgattgttttgatgttttagtcaacggttttgtttgtgtaccagattatcttatactgattgcttatgaatgatgatgttataag
|||||||||| |||||  ||| ||||||||||||||||||||  ||||| |  || || || || |||||| |  | || |||||  | ||||| ||||||||||     || || |     ||| |  | ||     |  |||  ||||||  |            | |                                   
TAAGATGGACCAACTATCTGAAACCAGACATCAAGAGAGGGAACTTCTCGCGTGAGGAAGAGCAAACTATCCTCCAGCTGCATTCCATCCTTGGCAACAAgtaatacctgaacctagctgacatt-tcataatccccaaagcaagtgttttggctaatctgtgagcaaaccag--------------------------------

upper sequence: AT5G10280.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G159547_T01 (Zea mays), 5'ss of exon 2
TAAGATGGACGAACTACTTGAGACCAGACATCAAGAGAGGGAGATTCTCTCCGGACGAGGAACAGACTATCTTGAATCTTCATTCAGTTCTTGGAAACAAgtaat-taatcttgtgatgattgttttgatgttttagtcaacggttttgtttgtgtaccagattatcttatactgattgcttatgaatg-atga-tgttataag
| |||||||| ||||||||||| |||||||||||||||||||  ||| | | ||| || |||||||| ||| |  | ||||| || || ||||| |||||||| |       |       |  |   ||||  |  | |  |           |  || || |    |  || | |   || ||| ||| |||  ||  || | 
TGAGATGGACCAACTACTTGAGGCCAGACATCAAGAGAGGGAAGTTCACCCAGGAGGAAGAACAGACCATCCTCCAGCTTCACTCCGTCCTTGGCAACAAgtactgctgcactacacccctcttacagatgcct--gcctgccaccca--ccatccactagctagcttcttagtaaaatctcatgcatgcatgcctggcatcaa