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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTATGAGGCGTTTCCGACAGTGATGGACATCAATAAGATACAAGAGATTTTGCCTCACAGgtgataattttattaaagcattgttctttttacagctgaagtttgcattgttgtgatccagtttctcaaatctgaatcttgttgtgtag

Basic information

species Arabidopsis thaliana
transcript AT5G10160.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874760|gb|AU235591.1|AU235591
EST:     TTTCCGACAGTGATGGACATCAATAAGATACAAGAGATTTTGCCTCACAG                         ATTCCCATTTCTGTTAGTTGATAGAGTGATAGAGTACACAGCTGGTGTATC
genomic: TTTCCGACAGTGATGGACATCAATAAGATACAAGAGATTTTGCCTCACAGgtgataattt ... tgttgtgtagATTCCCATTTCTGTTAGTTGATAGAGTGATAGAGTACACAGCTGGTGTATC
EST: gi|164071885|gb|ES138151.1|ES138151
EST:     GTGATGGACATCAATAAGATACAAGAGATTTTGCCTCACAG                         ATTCCCATTTCTGTTAGTTGATAGAGTGATAGAGTACACAGCTGGTGTAT
genomic: GTGATGGACATCAATAAGATACAAGAGATTTTGCCTCACAGgtgataattt ... tgttgtgtagATTCCCATTTCTGTTAGTTGATAGAGTGATAGAGTACACAGCTGGTGTAT
EST: gi|116479877|gb|EG522469.1|EG522469
EST:     CCGACAGTGATGGACATCAATAAGATACAAGAGATTTTGCCTCACAG                         ATTCCCATTTCTGTTAGTTGATAGAGTGATAGAGTACACAGCTGGTGTATC
genomic: CCGACAGTGATGGACATCAATAAGATACAAGAGATTTTGCCTCACAGgtgataattt ... tgttgtgtagATTCCCATTTCTGTTAGTTGATAGAGTGATAGAGTACACAGCTGGTGTATC
EST: gi|124881140|gb|EH960042.1|EH960042
EST:     AGATTTTGCCTCACAG                         ATTCCCATTTCTGTTAGTTGATAGAGTGATAGAGTACACAGCTGGTGTAAT
genomic: AGATTTTGCCTCACAGgtgataattt ... tgttgtgtagATTCCCATTTCTGTTAGTTGATAGAGTGATAGAGTACACAGCTGGTGTA-T

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTATGAGGCGTTTCCGACAGTGATGGACATCAATAAGATACAAGAGATTTTGCCTCACAGgtgataattttattaaagcattgttctttttacagctgaagtttgcattgttgtgatccagtttctcaaatctgaatcttgttgtgtag

- - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - AAGAGA