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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACCAAATCGGTATGTGGGAAGAAAGTTTCAAGAACAATGGAGACATGTATACGCCTGGCTCTATCATAATCCCGACTAACGAAAAACCAGACAGCTTGgtacttcaaagtttgctatatatttcagataaagtgaattcagaaactaatgcttgctttaatctttgttcag

Basic information

species Arabidopsis thaliana
transcript AT5G10030.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877010|gb|AU237841.1|AU237841
EST:     ATACGCCTGGCTCTATCATAATCCCGACTAACGAAAAACCAGACAGCTTG                         TCAGAGGATACTTCTCATGGGACAGAAGGAACTCCTCACAAGTTTGACCAA
genomic: ATACGCCTGGCTCTATCATAATCCCGACTAACGAAAAACCAGACAGCTTGgtacttcaaa ... ctttgttcagTCAGAGGATACTTCTCATGGGACAGAAGGAACTCCTCACAAGTTTGACCAA
EST: gi|125035910|gb|EL108179.1|EL108179
EST:     ACTAACGAAAAACCAGACAGCTTG                         TCAGAGGTATACTTCTCATGGGACAGAAGGAACTCCTCACAAGTTTGACCA
genomic: ACTAACGAAAAACCAGACAGCTTGgtacttcaaa ... ctttgttcagTCAGAGG-ATACTTCTCATGGGACAGAAGGAACTCCTCACAAGTTTGACCA