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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGTGCTTTCCCTGTCTGTAGACCTTGCTATGAGTATGAGAGACGAGAAGGAAACCAATCTTGTCCTCAGTGCAAAACTCGTTACAAGCGCATCAAAGgtcacacttacttgtttcaacaagttttaacctttgtctgatcttatgtatctgacaaaggtttcttattgttttcag

Basic information

species Arabidopsis thaliana
transcript AT5G09870.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G09870.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G15380.1 (Glycine max), 5'ss of exon 2
GAATGTGCTTTCCCTGTCTGTAGACCTTGCTATGAGTATGAGAGACGAGAAGGAAACCAATCTTGTCCTCAGTGCAAAACTCGTTACAAGCGCATCAAAGgtcacacttactt-gtttcaacaagttttaacctttgtctgatcttatgtatctgacaaaggtttcttattgttttcag----------------
|| ||||||||||| || || | ||||||||||||||||| || || || || ||||| |||||||||||||||| || | ||||| || ||||||||| | | | ||| || | | ||| || | || | | ||| | || ||| ||||||| | || |
GAGTGTGCTTTCCCGGTTTGCCGGCCTTGCTATGAGTATGAAAGGCGCGAGGGGAACCAGGCTTGTCCTCAGTGCAAGACCAGATACAAACGTATCAAAGgtgagattggctttgtatttcctttctttgactctggtatcttgttactgttgtgg-aaaaatttcttacagcgttaatgatgaatgaattgcag

upper sequence: AT5G09870.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G32100.1 (Glycine max), 5'ss of exon 2
GAATGTGCTTTCCCTGTCTGTAGACCTTGCTATGAGTATGAGAGACGAGAAGGAAACCAATCTTGTCCTCAGTGCAAAACTCGTTACAAGCGCATCAAAGgtcacacttactt-gtttcaacaagttttaacctttgtctgatcttatgtatctgacaaaggtttcttattgttttcag--------------
|| ||||||||||| || || | ||||||||||||||||| || || ||||| | ||| |||||||||||||||| || | ||||| || ||||||||| | | | || || | ||| || | || | | ||| | || | | | | |||| |
GAGTGTGCTTTCCCGGTTTGCCGGCCTTGCTATGAGTATGAAAGGCGTGAAGGGATCCAGGCTTGTCCTCAGTGCAATACCAGATACAAACGTATCAAAGgtgagattggttttgtgcttcctttctttgactctggtatcttgttactgttgtggaagttttcttacagtgttaccgaagaatgaattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125267677|gb|EL281762.1|EL281762
EST:     TCCTCAGTGCAAAACTCGTTACAAGCGCATCAAAG                         GAAGTCCAAGGGTTGAAGGAGATGAGGAGGATGATGGAATTGATGATCTTG
genomic: TCCTCAGTGCAAAACTCGTTACAAGCGCATCAAAGgtcacactta ... ttgttttcagGAAGTCCAAGGGTTGAAGGAGATGAGGAGGATGATGGAATTGATGATCTTG