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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag

Basic information

species Arabidopsis thaliana
transcript AT5G09810.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os03g61970.1 (Oryza sativa), 5'ss of exon 2
TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag
  |  ||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||  | |    | |    ||    | |   |  || |||  ||| | |    |  |||  || | || | || |   |   | | | |  |   
--ATTAATGGCCGACGGTGAGGATATCCAGCCACTTGTATGTGACAATGGCACTGGAATGGTCAAGgtttgattc-ttataccattgtccattcgttttttttaa--ttcatggaatgagttgttcaaaaataataataactctcactctctctctag--

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os01g73310.1 (Oryza sativa), 5'ss of exon 2
----------TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgat-ttttgtatattaacag
          |   ||||||| || ||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| ||  |     | | |||| |   | |||  |    |          || |  | |   |   |      | | |  ||||| |         
AGTAAATCTATAGGAAATGGCTGACGGTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtcaggaacttcatct-tttaaaccatctatcatctccaagactccaactgcatttttaccaatttgaattccttaaaattttgcag--------

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
--------TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgt--gagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag
        |   ||||||| || |||||||| || ||||| ||||||||||||||||| ||||||||||| |||||  || ||    | | | |||   |  |   |  |  |||  |   | ||    | ||   || | |||    ||| |  |||    ||  |   
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatg-taatgtatgtcgtct--cctgctgaatattacattacattacatttcatcatgtag--

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 5'ss of exon 2
TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgt--gagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag
    ||||||| || |||||||| || ||||| ||||||||||||||||| ||||||||||| |||||  || ||    | | | |||   |  |   |  |  |||  |   | ||    | ||   || | |||    ||| |  |||    ||  |   
---GAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatg-taatgtatgtcgtct--cctgctgaatattacattacattacatttcatcatgtag--

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os10g36650.1 (Oryza sativa), 5'ss of exon 2
--------TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggtt---ctaaccttct--ttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag----------------
          | ||||||| || |  ||||| |||||||| |||||||||||||||||||| |||||||| ||||| |   | | || | | || |  |  | || |||   | ||  ||||   || ||   ||   |   || | |||  | | |  |    ||||||| |                
ATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaagtgatgacttgg-catcgcattgttgaacaaaatttctacctgatggtaattattgttacaattgagaa-gctcatcaagtattaactgttttcatttttcatag

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os01g64630.1 (Oryza sativa), 5'ss of exon 2
-------TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagtt--------------------agactgtttatttagatact--gtatggttctaaccttctttg-----ttgtacatgtgtaagact--actgatc-atgatttttgtatatt-aacag
       |||   ||||| || |   ||||||| |||||  |||||||||||||||| ||||||||||| ||||| ||||                    | ||||||  ||   | | |  | ||| |   |  ||  ||||     |  ||||| ||||  ||   ||  ||  || |||| |  || |  || ||
AAACACTTGAGGGATGGCTGAAG---AGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaattttcctgccacgctgtaaaactgttagttcgcacaattgggatgttcagattctcttttgcctgctaatacatttgtagcacccaacgaattgatcatttcttcatgtggaatag

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os11g06390.5 (Oryza sativa), 5'ss of exon 2
---------TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagact-gtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag---
             ||||||| || || ||||| || ||||| ||||| ||||||||||||||||| ||||| |||||  ||    ||  ||  |     | || | | |   | | |  | |  || |     | |||   ||    | |   || |||   |||    |   
AACCAGTAGGAGGAAATGGCTGACGGCGAGGACATCCAGCCCCTTGTGTGTGACAATGGAACTGGCATGGTCAAGgttcgtggtgctcattcgtagtatttctttgtagcagttatccccatgtttatgtg-atttaatcgtatactttacttttcttgcgaattgctggcag

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 2
-----------------TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagact-gtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag---
                     ||||||| || || ||||| || ||||| ||||| ||||||||||||||||| ||||| |||||  ||    ||  ||  |     | || | | |   | | |  | |  || |     | |||   ||    | |   || |||   |||    |   
GAATTCAGAACCAGTAGGAGGAAATGGCTGACGGCGAGGACATCCAGCCCCTTGTGTGTGACAATGGAACTGGCATGGTCAAGgttcgtggtgctcattcgtagtatttctttgtagcagttatccccatgtttatgtg-atttaatcgtatactttacttttcttgcgaattgctggcag

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G053299_T01 (Zea mays), 5'ss of exon 2
TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagact---actgatcatgatttttgtatattaacag
  |  |||||| || ||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||  | |   |  | ||| ||     |  ||   |  | |  |      |||| | |     |      | ||| ||     |   | | |   |||
--ATCAATGGCTGACGGTGAGGATATCCAGCCACTTGTGTGTGACAATGGCACTGGAATGGTCAAGgttcgatgctcgttctatctaccatgttcattcattcatctctgaaacctgtaaaggcagttgttgcagaatgaccagcccatgcttctctctgcag

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G067985_T13 (Zea mays), 5'ss of exon 2
------TG-AAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag
      || | ||||||| ||||||||||| || ||||| |||||||| |||||||| ||||||||||| ||||| ||     | ||   |             |  | | ||   ||||  | | ||  | |    | ||| || |||   | ||| | |||    
CAGTTCTGTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAGgtcagccc--ccgtccct-------------gactttgacaacctttact-tccaaatatg---ccactaattatg---tctgtcttttag---

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G110378_T03 (Zea mays), 5'ss of exon 3
----TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag
    | | ||||||| ||||||||||| || ||||| |||||||| |||||||| ||||||||||| ||||| ||     |        |     |    | | | |   |  | || || | || || |   |||| | ||  ||    || ||   |   ||
TTCTTTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAGgtcagccccccctcccccctgacccccaacttgatttgtacaaccttatt-tccaagtatgccactaattat-gtgtaccttctactcttctag

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G067985_T12 (Zea mays), 5'ss of exon 2
---TG-AAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag
   || | ||||||| ||||||||||| || ||||| |||||||| |||||||| ||||||||||| ||||| ||     | ||   |             |  | | ||   ||||  | | ||  | |    | ||| || |||   | ||| | |||    
TTCTGTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAGgtcagccc--ccgtccct-------------gactttgacaacctttact-tccaaatatg---ccactaattatg---tctgtcttttag---

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G110378_T01 (Zea mays), 5'ss of exon 2
TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag
    ||||||| ||||||||||| || ||||| |||||||| |||||||| ||||||||||| ||||| ||     |        |     |    | | | |   |  | || || | || || |   |||| | ||  ||    || ||   |   ||
----AAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAGgtcagccccccctcccccctgacccccaacttgatttgtacaaccttatt-tccaagtatgccactaattat-gtgtaccttctactcttctag

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 2
---------TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagact-gtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag
         | | ||||||| || |||||||| |||||||| ||||| ||||||||||||||||| ||||| |||||  ||    || ||| ||   | ||||  ||  |    | | | ||| |  ||  |   | | ||   |  | |  |  |      |||  |||
CATCATCAGTAACAAATGGCTGACGGTGAGGACATTCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagttcttgttcatgctggtacttcatattctgcaacctttttctgctaatttaatcacacgttttcttacaaact------attggcag

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G126190_T03 (Zea mays), 5'ss of exon 2
TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagact-gtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag
| | ||||||| || |||||||| |||||||| ||||| ||||||||||||||||| ||||| |||||  ||    || ||| ||   | ||||  ||  |    | | | ||| |  ||  |   | | ||   |  | |  |  |      |||  |||
TAACAAATGGCTGACGGTGAGGACATTCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagttcttgttcatgctggtacttcatattctgcaacctttttctgctaatttaatcacacgttttcttacaaact------attggcag

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G067985_T09 (Zea mays), 5'ss of exon 2
TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag
    ||||||| ||||||||||| || ||||| |||||||| |||||||| ||||||||||| ||||| ||     | ||   |             |  | | ||   ||||  | | ||  | |    | ||| || |||   | ||| | |||    
----AAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAGgtcagccc--ccgtccct-------------gactttgacaacctttact-tccaaatatg---ccactaattatg---tctgtcttttag---

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G067985_T11 (Zea mays), 5'ss of exon 1
---------------------------------TG-AAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag
                                 || | ||||||| ||||||||||| || ||||| |||||||| |||||||| ||||||||||| ||||| ||     | ||   |             |  | | ||   ||||  | | ||  | |    | ||| || |||   | ||| | |||    
ATGATTCTATCCATATGCCACTTGCAGCAGTTCTGTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAGgtcagccc--ccgtccct-------------gactttgacaacctttact-tccaaatatg---ccactaattatg---tctgtcttttag---

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G030169_T03 (Zea mays), 5'ss of exon 1
----------------------------------TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatca--------tgatttttgtatat-taacag
                                    | ||||||| || |  ||||| |||||||| || |||||||||||||||||||||||||| ||||| | |      | ||      ||| | | |  |  |  |||  |||    ||||  | | ||| |     |||           |||||  || | | | ||
ATTGTTTTCATTCATGCAGATTGCAGATCATTTAACATAAATGGCTGACGCAGAGGACATTCAGCCCCTAGTCTGTGACAATGGAACTGGAATGGTCAAGgtaactgtagtcgcttggcatcatattctctaatgatt-cctctttttccatacagcttttagattttcagtcaatgttaagcactttttccatctcttatag

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G082484_T01 (Zea mays), 5'ss of exon 2
---------------TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgta-catgtgtaa---gactactgatc-atgatttttgtatattaacag----------
                 | ||||||| ||    ||||| |||||||| || |||||||||||||||||||||||||| ||||| | |  | |   ||      ||| | | ||    |  | || |||   | | | | | |||    | |     || ||| |  || | |     |            
ATTGCAGATCATTTAACATAAATGGCTGACTCAGAGGACATTCAGCCCCTAGTCTGTGACAATGGAACTGGAATGGTCAAGgtaattgtggccacttggcgtcatattctctgcagattcctttttttcaggcagcttttataatttaattttcagtcgatgttcattattttccccccatctcttatag

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G030169_T02 (Zea mays), 5'ss of exon 2
---------------TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatca--------tgatttttgtatat-taacag
                 | ||||||| || |  ||||| |||||||| || |||||||||||||||||||||||||| ||||| | |      | ||      ||| | | |  |  |  |||  |||    ||||  | | ||| |     |||           |||||  || | | | ||
ATTGCAGATCATTTAACATAAATGGCTGACGCAGAGGACATTCAGCCCCTAGTCTGTGACAATGGAACTGGAATGGTCAAGgtaactgtagtcgcttggcatcatattctctaatgatt-cctctttttccatacagcttttagattttcagtcaatgttaagcactttttccatctcttatag

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G067985_T04 (Zea mays), 5'ss of exon 2
---TG-AAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag
   || | ||||||| ||||||||||| || ||||| |||||||| |||||||| || |||||||| ||||| ||              | |   |||  | || | ||||||  ||     | |||       | ||| || |||  | |  | ||       
TTCTGTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagcc----------ccttggccctgacttgtac-aacctttatttccaaatatg-------ccactaattatgtctgtcctttag------

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G067985_T08 (Zea mays), 5'ss of exon 1
---------------------------------TG-AAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag
                                 || | ||||||| ||||||||||| || ||||| |||||||| |||||||| || |||||||| ||||| ||              | |   |||  | || | ||||||  ||     | |||       | ||| || |||  | |  | ||       
TTGATTTTATCCACATGCCACTTGCAGCAGTTCTGTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagcc----------ccttggccctgacttgtac-aacctttatttccaaatatg-------ccactaattatgtctgtcctttag------

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G104017_T04 (Zea mays), 5'ss of exon 2
---TG-AAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatg-atttttgtatattaacag
   || | ||||||| ||||||||||| || ||||| |||||||| |||||||| || |||||||| ||||| |||    || ||    |  ||  ||||  |   ||  || |        | || ||     | ||| ||  ||  | | | | |  ||    
TTCTGTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagt---gcttttccccttaat-ttgtacagccatagtctcccccacc-caaatatg-----ccactaattttgtgtatctatcttctag---

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G067985_T02 (Zea mays), 5'ss of exon 2
------TG-AAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag
      || | ||||||| ||||||||||| || ||||| |||||||| |||||||| || |||||||| ||||| ||              | |   |||  | || | ||||||  ||     | |||       | ||| || |||  | |  | ||       
CAGTTCTGTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagcc----------ccttggccctgacttgtac-aacctttatttccaaatatg-------ccactaattatgtctgtcctttag------

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G067985_T06 (Zea mays), 5'ss of exon 2
---TG-AAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactg--tttatttagatactgtatggttctaa-----ccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag
   || | ||||||| ||||||||||| || ||||| |||||||| |||||||| || |||||||| ||||| ||       |   | | ||  | |   | |  ||| ||     ||     |  |||   |   | || ||  |  |  ||       |  |  ||   
TTCTGTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagccccttggccctgacttgtacaacctttatttccaaatatgccactaattatgtctgtcctttaggctggttttgctggggacgatgcaccaagg-

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G104017_T01 (Zea mays), 5'ss of exon 2
TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatg-atttttgtatattaacag
    ||||||| ||||||||||| || ||||| |||||||| |||||||| || |||||||| ||||| |||    || ||    |  ||  ||||  |   ||  || |        | || ||     | ||| ||  ||  | | | | |  ||    
----AAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagt---gcttttccccttaat-ttgtacagccatagtctcccccacc-caaatatg-----ccactaattttgtgtatctatcttctag---

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G104017_T03 (Zea mays), 5'ss of exon 2
------TG-AAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatg-atttttgtatattaacag
      || | ||||||| ||||||||||| || ||||| |||||||| |||||||| || |||||||| ||||| |||    || ||    |  ||  ||||  |   ||  || |        | || ||     | ||| ||  ||  | | | | |  ||    
CAGTTCTGTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagt---gcttttccccttaat-ttgtacagccatagtctcccccacc-caaatatg-----ccactaattttgtgtatctatcttctag---

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G006765_T02 (Zea mays), 5'ss of exon 2
--------------------TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag
                    |   ||||||| || || ||||| || ||||| ||||| ||||||||||||||||| ||||| |||||   ||  | |  || || |    |||  |  |  | |    | ||||| |     | |||    ||  ||||  |  |      | |  |||
TGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgt---ttgtagttcttgttca--cgctgcttcatgttcagtaacattgttctgttaatttaa--tcac--atcacaaact------actggcag

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 2
-----TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagt--tagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag
     | ||||||||| |||| |||||||||||| || ||||| ||||||||||||||||||||||||||||| |||  |   | |||| ||   |   |   ||  ||||       ||| | | ||| | |    | | | ||    ||  |  | | |  ||||
TTTGGTAAAAAATGGCTGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttgttagtgtaattgcatctatttagtcttggttt-cat-tattgctcaatttatttaaatgatcatctgtgtacag

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 2
-----TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagt--tagactgtttatttagatactgtatggttctaaccttctttgttgtacatgt-gtaagactactgatcatgatttttgtatattaacag
     | ||| ||||| |||| |||||||||||| || ||||||||||||||||||||||||||||||||||| |||  |   | |||| ||  | || ||| |  ||  | |  |   | | |     ||  | | || | | ||    ||  |  | | |  ||||
TTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttctgtta-tgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
--------TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagt--tagactgtttatttagatactgtatggttctaaccttctttgttgtacatgt-gtaagactactgatcatgatttttgtatattaacag
        | ||| ||||| |||| |||||||||||| || ||||||||||||||||||||||||||||||||||| |||  |   | |||| ||  | || ||| |  ||  | |  |   | | |     ||  | | || | | ||    ||  |  | | |  ||||
TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttctgtta-tgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G32220.2 (Glycine max), 5'ss of exon 2
-----TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagt--tagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag
     | ||| |||||||||| |||||||||||| || ||||| ||||||||||||||||||||||| ||||| |||  |   | | ||  ||   |  |  |||    |   | |||           ||  |  |||     |  |||||||  |||   |||||
GTTTGTAAAAGATGGCCGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTCAAGgttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctt-tgattttaatatgg-aacag

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 1
----------------------------------TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagt--tagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag
                                  | ||| |||||||||| |||||||||||| || ||||| ||||||||||||||||||||||| ||||| |||  |   | | ||  ||   |  |  |||    |   | |||           ||  |  |||     |  |||||||  |||   |||||
TATTTCATGGCACCCTATGCTTTTTGCAGGTTTGTAAAAGATGGCCGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTCAAGgttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctt-tgattttaatatgg-aacag

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G15480.1 (Glycine max), 5'ss of exon 2
-----TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag
     | ||| ||||| ||||  ||||||||||| || ||||| || |||||||||||||||||||| ||||| ||| |    ||  ||||   |  ||| ||  | |     |    ||  |   |   ||||   | | ||  | |||||  |||   |||||
GTTTGTAAAAGATGGCAGATGCCGAGGATATTCAACCCCTTGTTTGCGACAATGGAACTGGAATGGTCAAGgttagt-acttcgtggatttttgttttgt-tgcatgtgcatatgcaagtcttgagttcataag-tgaataat--ttattttaatatgg-aacag

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 5'ss of exon 3
-----TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttat-ttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag----------
       ||  |||||||||  ||| ||||| ||||| || ||||||||||||||||||||||||||||||||  |||      ||  |  | |||| || |   || |    || |||| ||  | |    | |   | |    || |  |||  || |||              
GTAATAAAAGGATGGCCGATACTGAAGATATCCAGCCCCTCGTCTGTGACAATGGAACTGGAATGGTGAAGgtctgttgtttctttcttgcttgata-tgcagatttgttgtgttgtttgctgctcct-caaatgctcaatttgaataagctttccatgttatgctttatatgcag

upper sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 5'ss of exon 3
--------TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgttta---tttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatga-tttttgtatattaacag----
        | | ||||||| || ||||||||  | |||||  | || || |||||||||||||||||||| |||||||| |      | ||      ||| | |   |  | | ||| |  ||  ||| |     |  |  ||| | ||| |||  || ||   |  || |     
GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCGACAATGGAACTGGAATGGTCAAGgtgaggtcactcttctaaaacccagagattaacttttccgaacttggttcattggattcaag-gattcta-taatcttgagcttctgctgaaaaatattcta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164200920|gb|ES100155.1|ES100155
EST:     GTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAG                         GCTGGTTTTGCTGGTGATGAT
genomic: GTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttaga ... atattaacagGCTGGTTTTGCTGGTGATGAT
EST: gi|116471446|gb|EG514038.1|EG514038
EST:     TGAGGATATTCAGCCACTTGTCTGTGACAAATGGAACTGGAATGGTGAAG                         GCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTT
genomic: TGAGGATATTCAGCCACTTGTCTGTGAC-AATGGAACTGGAATGGTGAAGgtgagttaga ... atattaacagGCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTT
EST: gi|124792134|gb|EH881813.1|EH881813
EST:     ACTTGTCTGTGACAATGGAACTGGAATGGTGAAG                         GCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTT
genomic: ACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttaga ... atattaacagGCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTT
EST: gi|47828440|gb|CK118124.1|CK118124
EST:     GTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAG                         GCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTT
genomic: GTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttaga ... atattaacagGCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTT
EST: gi|124721222|gb|EH812624.1|EH812624
EST:     TGGAACTGGAATGGCGAAG                         GCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTT
genomic: TGGAACTGGAATGGTGAAGgtgagttaga ... atattaacagGCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTT
EST: gi|47829284|gb|CK118968.1|CK118968
EST:     GTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAG                         GCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTT
genomic: GTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttaga ... atattaacagGCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTT
EST: gi|164178938|gb|ES126737.1|ES126737
EST:     GTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAG                         GCTGGTTTTGCTGGTGATGATG
genomic: GTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttaga ... atattaacagGCTGGTTTTGCTGGTGATGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag

- - - - - - - - - GAGGAT