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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTTCCCACTGTCTCCCTTAACGTTAAAAGGAATTGAGGATGCTGGATTTAAGACAATGACTGTTGTTCAGGAGGCTACTCTTCCTCTCATTCTCCAAGgtgaacttgcctaaaaggcagaaacttttgcatctttcttcatgattccttatgttttgtcatgacttaaacattttgaagcttgactattcctctattaattattcttccttggttttccag

Basic information

species Arabidopsis thaliana
transcript AT5G08620.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G08620.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G041732_T01 (Zea mays), 5'ss of exon 2
CAGTTCCCACTGTCTCCCTTAACGTTAAAAGGAATTGAGGATGCTGGATTTAAGACAATGACTGTTGTTCAGGAGGCTACTCTTCCTCTCATTCTCCAAGgtgaactt--gcctaaaaggcagaaacttttgcatctttcttcatgattccttatgttttgtcatgacttaaacattttgaagcttgactattcctctattaattattcttccttggttttccag
 | | |||  | ||||||||  |  | |||||  || ||| |||||| | | |    ||||||| |||||||||||||||||||||| | || || ||||||  | ||  |  |  | |   |  | ||||  || || ||| |||||   |||  |||| |||  |    ||  | |||| | |  | |   |    |      |||                 
GAATGCCCGTTATCTCCCTTGTCACTGAAAGGTGTTAAGGCTGCTGGGTATGAACGGATGACTGCTGTTCAGGAGGCTACTCTTCCTATTATACTTCAAGgttgatttcagtgtttatgtttgctatttttagat-ttactttatgata--ttacctttt-tcagaa----aatgtattgaggttc-attgcgcacacaaaggccattg----------------

upper sequence: AT5G08620.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA07G06240.1 (Glycine max), 5'ss of exon 2
CAGTTCCCACTGTCTCCCTTAACGTTAAAAGGAATTGAGGATGCTGGATTTAAGACAATGACTGTTGTTCAGGAGGCTACTCTTCCTCTCATTCTCCAAGgtgaacttgcctaaaaggcagaaacttttgcatctttcttcatgattccttatgttttgtcatgacttaaacattttgaagcttgactattcctctattaattattcttccttggttttccag
|| |   || | || ||  |  | ||||||||| |  |||||||||||| | ||| |||||| |||||||||||||||||||||||  | |||||| ||||| |   |                 ||||   |  ||   ||||     |   |   | |   |    ||||| |   |||  || || ||  | |  |   | |       || | |  |  
CAATGTTCAATCTCCCCACTGTCATTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACGGTTGTTCAGGAGGCTACTCTTCCAGTAATTCTCAAAGgttagtct----------------ttttt---ttcttggacatggaggatggagcaatttggagga--aaacaatcgtaagactgtcttttttttttgtgtgtgtgtggttatgctctgtc--

upper sequence: AT5G08620.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA16G02880.1 (Glycine max), 5'ss of exon 2
CAGTTCCCACTGTCTCCCTTAACGTTAAAAGGAATTGAGGATGCTGGATTTAAGACAATGACTGTTGTTCAGGAGGCTACTCTTCCTCTCATTCTCCAAGgtgaa-cttgcctaaaaggcagaaacttttgcatctttcttcatgattccttatgttttgtcatgacttaaacattttgaagcttgactattcctctattaattattcttccttggttttccag
|| |   || | |||||  |  | ||||||||| |  |||||||||||| | ||| |||||| ||||| |||||||||||||||||  | |||||| ||||| |  |||   | |  | ||   |   | |     ||    |  |  |   || ||  | |||      ||  | ||     ||   | ||| |||  | |   |||| |||           
CAATGTTCAATCTCTCCACTGTCATTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACAGTTGTGCAGGAGGCTACTCTTCCAGTAATTCTCAAAGgttagtcttttttcattgacatggaggatggagcaatttgaaagaaaaca--atcttaaggcat------aatgtctt-----ttttttcttcttctggttac-gttctgcctg----------