1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGAATCAGAATGCTATGCTTTGCAGATCTATAGATGAGCTATTAAGGAAAGCTGGAACAGTGCATAGCTCTGAGCTTAAGGCACTTGAACAAAAGgtgagaatatatataacatgtcactaatcttttggtttgatctcttaatcatttccagttcagaatttgacatgaggatgctgaattttgtttttctacaatccag
species | Arabidopsis thaliana |
transcript | AT5G08540.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAAAAGATGGAACAGTGCATAGCTCTGAGCTTAAGGCACTTGAACAAAAG ACAGAGTTTAACATGEST: gi|86052732|gb|DR348489.1|DR348489
genomic: GGAAAGCTGGAACAGTGCATAGCTCTGAGCTTAAGGCACTTGAACAAAAGgtgagaatat ... tacaatccagACAGAGTTTAACATG
EST: GAAAAGATGGAACAGTGCATAGCTCTGAGCTTAAGGCACTTGGACAAANG ACAGAGTTTAACATGGAGGAGAEST: gi|86052733|gb|DR348490.1|DR348490
genomic: GGAAAGCTGGAACAGTGCATAGCTCTGAGCTTAAGGCACTTGAACAAAAGgtgagaatat ... tacaatccagACAGAGTTTAACATGGAGGAGA
EST: GAAAAGATGGAACAGTGCATAGCTCTGAGCTTAAGGCACTTGAACAAAAG ACAGAGTTTAACATGGAGGAGATATTGCGGAAATACATTCGTTATGCGTTGEST: gi|86052744|gb|DR348501.1|DR348501
genomic: GGAAAGCTGGAACAGTGCATAGCTCTGAGCTTAAGGCACTTGAACAAAAGgtgagaatat ... tacaatccagACAGAGTTTAACATGGAGGAGATATTGCGGAAATACATTCGTTATGCGTTG
EST: GAAAAGATGGAACAGTGCATAGCTCTGAGCTTAAGGCACTTGA-CAAAAG ACAGAGTTTAACATGG
genomic: GGAAAGCTGGAACAGTGCATAGCTCTGAGCTTAAGGCACTTGAACAAAAGgtgagaatat ... tacaatccagACAGAGTTTAACATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAATCAGAATGCTATGCTTTGCAGATCTATAGATGAGCTATTAAGGAAAGCTGGAACAGTGCATAGCTCTGAGCTTAAGGCACTTGAACAAAAGgtgagaatatatataacatgtcactaatcttttggtttgatctcttaatcatttccagttcagaatttgacatgaggatgctgaattttgtttttctacaatccag
- - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT