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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGGTAGCTTTGCTGTTGATACCTTGGACTTGGCTGATCTTGAGTGGTCACCTGATGATAGTTCTATTGTAGTGTGGGATTCGCCTCTTGAATATAAGgtatgtatcgttttggtattgatgctatttttagatagttattggaattttgttatgtttggtttgttggagatatctctaaaatttgtaccttttgggcag

Basic information

species Arabidopsis thaliana
transcript AT5G07590.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G07590.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os10g41370.1 (Oryza sativa), 5'ss of exon 2
AATGGGTAGCTTTGCTGTTGATACCTTGGACTTGGCTGATCTTGAGTGGTCACCTGATGATAGTTCTATTGTAGTGTGGGATTCGCCTCTTGAATATAAGgtatgt------atcgttttggtattgatgctatttttagatagttattggaatt-ttgttatgtttggtttgttgg-agatatctctaaaatttgtaccttttgggcag
|||| ||  |||||||||||| ||  | |||||||| | | ||||||||||||| ||||||||| ||||||| || |||||||| | ||| ||||| |||||   |      || ||  |   |||| || | | |||   || || |   |||  |  | || |   || |||    | ||||   || || ||||             
AATGAGTGTCTTTGCTGTTGACACGGTAGACTTGGCAGGTGTTGAGTGGTCACCAGATGATAGTGCTATTGTGGTCTGGGATTCACTTCTGGAATACAAGgtgcatctcttcattgtactcccattgttgttttatttgcttacttttgaaaatcatcatcatttactgtatgtcattatatatgcatataacttgttaa----------

upper sequence: AT5G07590.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G374969_T01 (Zea mays), 5'ss of exon 2
AATGGGTAGCTTTGCTGTTGATACCTTGGACTTGGCTGATCTTGAGTGGTCACCTGATGATAGTTCTATTGTAGTGTGGGATTCGCCTCTTGAATATAAGgtatgt--atcgttttggtattgatgctatttttagatagttattggaattttgttatgtttggtttgttggagatatctctaaaatttgtacct--tttgggcag
||||  |  ||||||| |||| ||  | ||||| |||| | |||| ||||||||  |||||||| ||||||| || |||||||| | |||||||||||||||   |  ||   ||    |   || ||||  || || |  |      ||||  ||    |||  || |   |  || |  |||||  |  ||    |   |||  
AATGACTGTCTTTGCTATTGACACGGTAGACTTAGCTGGTGTTGAATGGTCACCATATGATAGTGCTATTGTTGTTTGGGATTCACTTCTTGAATATAAGgtgcatccatttcttcttcacaaat-ctatgatttgaca--tgcaactatttcatt-cacttgcattttgtcatgta-cggtaaaacgttcactaggtgcaggcg-

upper sequence: AT5G07590.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA20G33770.1 (Glycine max), 5'ss of exon 2
AATGGGTAGCTTTGCTGTTGATACCTTGGACTTGGCTGATCTTGAGTGGTCACCTGATGATAGTTCTATTGTAGTGTGGGATTCGCCTCTTGAATATAAGgtatgtatcgttttg-gtattgatgctattt-ttagatagttattggaattttgttatgtttggtttgttggagatatctc-taaaatttgtaccttttgggcag
 ||||| |  ||||| || || ||  | |||||||||||| | || |||||||||||||||||| |||| ||  | |||||||| || ||||| || ||||||  | ||||| |   ||| ||   | ||| | |||| |        |  ||  | | || || |   |||    ||    |   | | |   ||||| |    
CATGGGCAATTTTGCAGTCGACACTCTAGACTTGGCTGATATCGAATGGTCACCTGATGATAGTGCTATAGTGATATGGGATTCACCACTTGATTACAAGgtaact-tcgttctatatatggaaagtctttataagattgcacccaccagcttaatgttttagggtaactggttccatgaaatggtactagaggctttttg----

upper sequence: AT5G07590.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA10G33830.1 (Glycine max), 5'ss of exon 2
AATGGGTAGCTTTGCTGTTGATACCTTGGACTTGGCTGATCTTGAGTGGTCACCTGATGATAGTTCTATTGTAGTGTGGGATTCGCCTCTTGAATATAAGgtatgtatcgttttg-gtattgatgctattt-ttagatagttattggaattttgttatgtttggtttgttggagatatctc-taaaatttgtaccttttgggcag
 ||||| |  ||||| || || ||  | |||||||||||| | || |||||||||||||||||| |||| ||  | |||||||| || ||||| || |||||| |  ||||| |  |||| ||   | ||| | |||| |           ||  | | ||||| |   |||    ||    | | | | |   ||||| |    
CATGGGCAATTTTGCAGTCGACACTCTAGACTTGGCTGATATCGAATGGTCACCTGATGATAGTGCTATAGTGATATGGGATTCACCACTTGATTACAAGgta-gcttcgttctatgtatggaaaatctttataagattgcacccactggcttaatgtttttgggtaactggttccataaaatgatactggaggctttttg----

upper sequence: AT5G07590.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv16s0013g01510.t01 (Vitis vinifera), 5'ss of exon 3
AATGGGTAGCTTTGCTGTTGATACCTTGGACTTGGCTGATCTTGAGTGGTCACCTGATGATAGTTCTATTGTAGTGTGGGATTCGCCTCTTGAATATAAGgtatgtatcgttttggtattgat-gctatttttagatagttattggaattttgttatgtttggtttg---ttggagatatctctaaaatttgtaccttttgggcag
 ||||||   |||||||||||||| ||||||||||||||| |||| |||||||| ||||||||| |||||||  | |||||||||||||||||||| ||||| |  |   |     |  | || | |  || |  |||   |    |||||| ||   ||    |||   |||  ||  ||||| |||   |    ||||      
TATGGGTGTTTTTGCTGTTGATACGTTGGACTTGGCTGATATTGAATGGTCACCAGATGATAGTGCTATTGTTATCTGGGATTCGCCTCTTGAATACAAGgtttccaaattgacacttctcattgtttgttgtgaatatgaaccataattttttttctttattgttgcaattgtggagttctcttaaagaagattttttt------

upper sequence: AT5G07590.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S74_214V6.1 (Physcomitrella patens), 5'ss of exon 3
AATGGGTAGCTTTGCTGTTGATACCTTGGACTTGGCTGATCTTGAGTGGTCACCTGATGATAGTTCTATTGTAGTGTGGGATTCGCCTCTTGAATATAAGgtatgtatcg--ttttggtattgatgctatttttagatagttattggaattttgttatgtttggtttgttggagatatctctaaaatttgtaccttttgggcag
 |||||||  ||||  || |  || |  ||||| |||||||| |||||||||||| |||| ||| |  |||  ||||||||||| ||||||||||| ||||||||| |    | |||  |   ||||   |||    |  || || | |||    ||| ||| |   ||    || | |  | || | |  ||  ||   |   
CATGGGTAATTTTGAAGTCGGCACTTCTGACTTTGCTGATCTAGAGTGGTCACCTAATGACAGTACAGTTGCTGTGTGGGATTCTCCTCTTGAATACAAGgtatgtttgaactgttgcaaaatatgcgcctttagtttttttttttgtattagcctattttttggcagtcat-gaaagcaatgaagtatcaacacttacag---

upper sequence: AT5G07590.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S52_72V6.1 (Physcomitrella patens), 5'ss of exon 3
AATGGGTAGCTTTGCTGTTGATACCTTGGACTTGGCTGATCTTGAGTGGTCACCTGATGATAGTTCTATTGTAGTGTGGGATTCGCCTCTTGAATATAAGgtatgtatcgttt-tggtat-tgatgctatttttagatagttattggaattttgtta------tgtttggtttgttg-gagatatctctaaaatttgtaccttttgggcag-------------
 ||||| |  ||||  || |  |||  |||| | |||||||| |||||||||||  |||| ||| | ||||  ||||||||||| ||||||||||||||||| ||||  | |  | | || | |||| |  || |  |  || |  |  |||  |||      | ||||  | | || |     |  |    |||  |    ||||  | |             
CATGGGCAATTTTGAAGTGGGCACCACGGACCTCGCTGATCTAGAGTGGTCACCCAATGACAGTACAATTGCCGTGTGGGATTCTCCTCTTGAATATAAGgtgtgtacagatcgttgcatatcatgc-accttcaatttcttttctgtctttgtttacatgaatatttgcctcgctgtgttgccttccgttcattgctgaactttgtactggttctatttgcag

upper sequence: AT5G07590.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S24_257V6.1 (Physcomitrella patens), 5'ss of exon 3
AATGGGTAGCTTTGCTGTTGATACCTTGGACTTGGCTGATCTTGAGTGGTCACCTGATGATAGTTCTATTGTAG---TGTGGGATTCGCCTCTTGAATATAAGgtatgtatcgttttggtattgatgctatttttagatagttattggaattttgttatgtttggtttgttggagatatctctaaaatttgtaccttttgggcag---
   ||| |  ||||  |  |||||| | |||||||| ||| | || ||||||||   ||| ||    |   |||   |||||||||| |||||||||||||||||   | |  |||      | || | | |   |   | || |      |   |||| |||            || || || |||||  ||       |   |   
---GGGAACTTTTGGAGCAGATACCATCGACTTGGCGGATTTGGAATGGTCACCAACTGACAGCAACAACATAGCTGTGTGGGATTCACCTCTTGAATATAAGgt---tctactttacaacctaattccactggcaatgaattttctc--ctcgcttatttttccccgaaattccatttcactcaaattcataagcagatgtttgcta